Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08490 666 / 0 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT5G65720 86 / 1e-17 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) AT3G62130 61 / 9e-10 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G26600 53 / 3e-07 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G51920 49 / 4e-06 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036083 [exp] 162 / 2e-48 AT1G08490 144 / 5e-42 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10019252 [exp] 97 / 2e-21 AT5G65720 734 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011590 [exp] 91 / 2e-19 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10038033 [exp] 68 / 5e-12 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10009974 [exp] 67 / 8e-12 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031445 [exp] 55 / 1e-07 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10001514 [exp] 54 / 2e-07 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031768 [exp] 54 / 2e-07 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10031190 [exp] 53 / 5e-07 AT1G16540 1012 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066000 [exp] 683 / 0 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Potri.007G000600 [exp] 96 / 5e-21 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.005G003000 [exp] 69 / 3e-12 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.002G187200 [exp] 62 / 3e-10 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G112700 [exp] 60 / 2e-09 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G002400 [exp] 59 / 3e-09 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10031670 pacid=23180789 polypeptide=Lus10031670 locus=Lus10031670.g ID=Lus10031670.BGIv1.0 annot-version=v1.0 ATGGAAGCATTGGCCCTGAAATTCCCGCCTTCCAAGCTCTTCAACCCTAATTTCCCCGCTTCTCCATCCACCTTCTTACCCCTGCGCAACTTCGCCGCCT CTTCTTCACTGTCTTCTTCACTTCCTGTATCCACCGCCTCCGGAAGAGAAGCTGACTCACTCCTCGGACCGGCCTCCCTCGGCCACCTGACCCGACCCGA CTTCCCCATCCTCCACCAGGAGGTGAACGGGAAGAAGCTTGTATACTTGGACAATGCTGCAACTTCTCAGAAGCCCAGTGCGGTGCTGAAGGCTTTGCAG AGTTACTACCAAGGTTACAATTCCAACGTTCATAGAGGCAGACATTACCTTAGTGCCAAGGCCACAGACCAATATGAATTGGCTAGAAAGAAGGTAGCTG ATTTTATCAACGCAGAGGATAGCCAAGAGATTGTTTTTACTAAAAATGCTACTGAAGCAATCAATCTTGTGGCGTATACTTGGGGAGTCTCCAATCTAGA ACCAGGCGACGAGGTAATACTCACAGTTGCAGAGCACCACAGCGCTATTGTTCCATGGCAGATTGTAGCCCAAAAGACTGGCGCAGTGCTGAAGTATGTA AATTTGGATGAAAATGAGGTTCCTGAAGTGGAGAAGCTGCTGGAAATGGTTTCACCCAAAACAAAGCTGGTTGTTGTTCACCATATCTCAAATGTTCTTG CTTCCTTTCTTCCTATAAAACACATAGCACGTCGGGTACATGAAGTTGGAGGGAAAATCCTAGTTGATGCATGTCAAAGTGTTCCACATATGGCGGTCGA TGTCCAAGACCTAGATGCCGACTTCCTTGCTGCTTCATCTCATAAGATGTGTGGGCCTACAGGCATTGGATTCTTGTATGCAAAAAGTGATATATTGGCA GCCATGCCTCCCTTTCTAGGTGGTGGGGAAATGATCTCTGATGTATTCTTTGATCATTCCACGTATGCAGACCCTCCATCAAGGTTTGAGGCTGGTACCC CGGCTATCGGCGAAGCAATTGGCTTGGGAGCAGCAATTGATTACTTGCAAGGAATTGGGATGCAGAAGATTCATGACTACGAGACAGAGTTAGCTAACTA TTTATACGAAAGCCTCTCTACGATCCCCAACGTCCGGATATATGGACCGAAACCTTCAGAAATGGTGAAACGTGCTGCTCTGTGTTCTTTCAACGTCGAG GATGTTCACCCTACCGATCTAGCTGATTTTCTTGATCTACAATATGGGGTGGCAATCCGAACGGGTCACCACTGTGCGCAGCCTCTGCATCGGTATTTAG GTGTGAATGCAAGTGCTCGAGCCAGCCTTCATTTCTACAATACCAAAGAGGATGTGGACGACTTCATCAAAGCCCTCGGTGAAACAGTGGCCTTTTTCAA TTCTTGCAAGTAG
AA sequence Show only first row Show all	>Lus10031670 pacid=23180789 polypeptide=Lus10031670 locus=Lus10031670.g ID=Lus10031670.BGIv1.0 annot-version=v1.0 MEALALKFPPSKLFNPNFPASPSTFLPLRNFAASSSLSSSLPVSTASGREADSLLGPASLGHLTRPDFPILHQEVNGKKLVYLDNAATSQKPSAVLKALQ SYYQGYNSNVHRGRHYLSAKATDQYELARKKVADFINAEDSQEIVFTKNATEAINLVAYTWGVSNLEPGDEVILTVAEHHSAIVPWQIVAQKTGAVLKYV NLDENEVPEVEKLLEMVSPKTKLVVVHHISNVLASFLPIKHIARRVHEVGGKILVDACQSVPHMAVDVQDLDADFLAASSHKMCGPTGIGFLYAKSDILA AMPPFLGGGEMISDVFFDHSTYADPPSRFEAGTPAIGEAIGLGAAIDYLQGIGMQKIHDYETELANYLYESLSTIPNVRIYGPKPSEMVKRAALCSFNVE DVHPTDLADFLDLQYGVAIRTGHHCAQPLHRYLGVNASARASLHFYNTKEDVDDFIKALGETVAFFNSCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	14.0	0.7246
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	16.9	0.6457
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	17.4	0.6595
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	17.9	0.6880
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	18.4	0.6411
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	21.8	0.6557
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	25.4	0.6325
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	30.8	0.6258
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10030698 [exp]	31.6	0.6631
					Lus10000810 [exp]	32.8	0.5785

Compare expression of checked genes

Lus10031670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.