Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07200 509 / 0 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT5G51810 503 / 1e-178 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 502 / 3e-178 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 493 / 6e-175 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 353 / 1e-119 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 197 / 3e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 194 / 1e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 184 / 3e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G55970 172 / 1e-49 ATJRG21 jasmonate-regulated gene 21 (.1) AT4G10500 171 / 3e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 742 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015016 [exp] 582 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 579 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 576 / 0 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10041390 [exp] 484 / 2e-171 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 484 / 6e-171 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10038894 [exp] 426 / 3e-148 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10030185 [exp] 187 / 1e-55 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011476 [exp] 182 / 2e-53 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134600 [exp] 582 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 566 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 542 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 516 / 0 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 417 / 1e-144 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 404 / 1e-139 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 384 / 6e-132 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 373 / 6e-128 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 198 / 6e-60 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 197 / 2e-59 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031671 pacid=23180607 polypeptide=Lus10031671 locus=Lus10031671.g ID=Lus10031671.BGIv1.0 annot-version=v1.0 ATGAGAAAAAGCTTTAGAACTACGGCCTTTGCCTTCTCACTAAATCTCTACTTATTTCCTCTCTTGTTCTTCTTCTTCCCCCCAAGACTCCTCGCTCAGC ATTTCGTCGAACACCTTCCCTTCGATTTTCCTTCAATGGCCATCGTCGACACAGTAAACTCCCAACCCAAACAGAACCAAACCAGCAAGAACTCCTCCTC TCTAGTCTTCGACGCCAAGCTCCTTAACCACGAATCCAACATTCCCAGCCAGTTCATCTGGCCCGACCACGAGAAGCCTAAACCCAATGCGCCGGAGCTC CAAGTCCCGGTGATCGACCTCGCCGGTTTCCTCTCCGGCGATCCCGTCCAAACCGCCAAATCCGCCGAACTCATCGGAGAAGCCTGCCGGAAACACGGAT TCTTCCTCGTCGCCAACCACGGCGTTAAAAGCAAGCTCCTTTCCGCCGCCCACAAATACATGGACAACTTCTTCGAATTACCCCTCCCGGAGAAACAGAA AGCTCAGAGAAAGCTAGGAGAAAGCGCCGGTTACGCCAGTAGCTTCACCGGAAGATTCTCCTCCAAGCTCCCCTGGAAAGAAACGCTGTCGTTTAGATTC TTCAATGCTGACGATGGCTCCAGTCAAGTCGTCCGTGATTACCTCCTCAACACAATGGGTCAAGATTTCTCCGACTTCGGGAATGTGTACCAGGAGTACT GTGAGGCGATGAGCATGTTGTCGTTGAGGATCATGGAGCTGCTGGGGATGAGTTTAGGGTTGAAGAAGAGGACGGAGTTTAGGGAATTTTTCCAAGGGAA TGATTCGATAATGAGACTGAACTATTACCCACCATGTCAGAAACCTGAGGCCACGTTAGGAACAGGGCCACACTGTGATCCAACGTCGTTAACGATCCTA CATCAGGACCAAGTGGGAGGACTCCAAGTGTTTGTGGACAACGAGTGGCGCTCTATCACCCCCAATTCCGATGCTTTTGTCGTTAACATTGGCGACACTT TCATGGCGCTGTCAAACGGTCAGTTCAAGAGCTGTCTACATAGAGCGGTGGTGAACAGCAAGACAGCAAGGAAATCACTGGCCTTCTTCCTATGCCCAAA GGGGGACAAAGTGGTTAGCCCGCCAGCCGAACTAGTTGGCGAGAGTAACCCGAGGGTTTACCCGGATTTCACCTGGCCTACTCTGCTGGAGTTCACACAA AAGCATTACAGAGCCGACATGAATACCCTCGATGTCTTCAAAAACTGGCTTCTCAACCGAACTTGA
AA sequence Show only first row Show all	>Lus10031671 pacid=23180607 polypeptide=Lus10031671 locus=Lus10031671.g ID=Lus10031671.BGIv1.0 annot-version=v1.0 MRKSFRTTAFAFSLNLYLFPLLFFFFPPRLLAQHFVEHLPFDFPSMAIVDTVNSQPKQNQTSKNSSSLVFDAKLLNHESNIPSQFIWPDHEKPKPNAPEL QVPVIDLAGFLSGDPVQTAKSAELIGEACRKHGFFLVANHGVKSKLLSAAHKYMDNFFELPLPEKQKAQRKLGESAGYASSFTGRFSSKLPWKETLSFRF FNADDGSSQVVRDYLLNTMGQDFSDFGNVYQEYCEAMSMLSLRIMELLGMSLGLKKRTEFREFFQGNDSIMRLNYYPPCQKPEATLGTGPHCDPTSLTIL HQDQVGGLQVFVDNEWRSITPNSDAFVVNIGDTFMALSNGQFKSCLHRAVVNSKTARKSLAFFLCPKGDKVVSPPAELVGESNPRVYPDFTWPTLLEFTQ KHYRADMNTLDVFKNWLLNRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07200		ATGA20OX3, YAP1...	ARABIDOPSIS THALIANA GIBBERELL...		Lus10031671 [exp]	0	1
AT3G19990			unknown protein		Lus10028681 [exp]	12.8	0.9059
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10036062 [exp]	17.5	0.9040
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	24.8	0.9012
AT3G19990			unknown protein		Lus10028680 [exp]	27.9	0.8996
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	33.1	0.8990
					Lus10005393 [exp]	39.3	0.8960
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	39.7	0.8960
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	39.9	0.8972
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	40.7	0.8842
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	42.5	0.8943

Compare expression of checked genes

Lus10031671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.