Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51800 773 / 0 Trihelix Protein kinase superfamily protein (.1) AT2G33550 45 / 0.0001 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 44 / 0.0003 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 44 / 0.0005 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027398 [exp] 1374 / 0 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132300 [exp] 927 / 0 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1) Potri.012G117500 [exp] 47 / 5e-05 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 45 / 0.0002 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 43 / 0.001 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031672 pacid=23180681 polypeptide=Lus10031672 locus=Lus10031672.g ID=Lus10031672.BGIv1.0 annot-version=v1.0 ATGAGTGACCACAAAGGAGAACCCACCAAGAAGCAACCATCACAACAACAACAACACTCTTCTTCCTCTTCCCCGAAAGAATCACCGCCGCCGCACCTCC ACCGTCATCCGCCGTTCAACATCTCCCCTCCTCCTCTCTACATCCCCTCCGTACAATTCGACCCCACCACCGCCACAAACACAAAACGCCCCCGCTTCTC CTCCACCACCTCCTCCTCCTCCCAATGGAAGCTCCTCTCTCCTACCCACCCCAAACCCCCCGCCGTCACCGGCGGCGGCGAGCACGCAACCACCACAACA GCAGCTACCGGATCATCCTCCGACACGGCCACGTCATCCCCGACCCACTCCCCGCCGGTGCCGTCCCTCTCCACGAACAAACCCGCGGCAGAATCCCCCG CCGACGACCAGATCCAGACCCAAACCCACCAAACGCGAAAGGGGAAATTTGTCAGTCCGGTGTGGAAACCCAACGAGATGCTCTGGCTAGCGAAAGCGTG GCGAGCGCAGTACAACAACAACAACAACCACAGCCAATCATCGTCGTCAATCGACTACGACGTGATCCAATCAACGGCGACGAGGGGGAAAACCCGAGCG GAGAAGGACAGGGAAGTGGCGGCGGTTCTCAACCGGAACGGGATCAACCGCGACGCCAAGACCGCCGGGACGAAATGGGACAACATGCTGGGCGAGTTCC GGAAAGTCTACGAGTGGGAGCGCGGCGGCGAAAGGGATCGAATCGGAAAAAGCTACTTCCGCCTGTCGCCGTACGAGCGGAAGCTCCACCGGCTTCCGGC TTCTTTTGACGAGGAGGTATTCGACGAATTGTCTCAGTTCATGGGCTCACGGATTCGCTCTGCTCCTTCTTCCAGAGGAGCGGGCCTCCTCGTCAGCTCT ACGACGTCGTCCGGCGAAGATCCTAAAAACATCGTTTCGGGTACGACTATCACTCCCGCCAGGTCACTGCTGCTTCCTCCCCCGCCTTTTAAGGACGACG ATTTCCTTAATCTCCCCTTATGTTCAGGTCGGAGTAGCAAGCAGCTGGTGATGAGTGGTGGGGCAATGGAGCCTTACAATTTCCATGGATTGAGATCGAT CAACACTTCGTTGCTAGGGTTTGACTCGTCGACGATGGAGCCAGCTGGAGTTGGCTCGTGGTCGATGAGCAATTCGAAGGAGCTGAGGAGGATAGGGAAA GTGAGGATGACGTGGGAGGAATCTGTTAGTCTATGGGCGGAAGAAGTGGAGCATCACAGAGGAAGAATCAAAGTTCAAGGTTCGAGCTTCCTCAATGCGG ACGAGCTCATGTTTGTTGACGATTCCATGGTAGCCTGTACTATGGAATCGTTCGAAGACGGTGCAGGAGGAGCACCGTTAGCTCTTAGAGGCTTCTCCGT TGACAAGTTTGTCCCCGGTCAACACATCAAGGTCTTCGGGAGGAAAAAGTCAAAGTCCTCTCCTTCCACTTCAGCTCCTCTAACAGAGATTCGACCAGCA ATGGCAACGGTGGAATATCAAGACCCGACGGAGTACTACATGAGCTGCCTCCGAGCCCCACCGCCGACGCTACCGACGTTGTTCGAGCTGTCGTGGTACA TACAAGAACCGCCGCCAGAAGAGCTACGGTTCCCGATTCGTAAAGATGTGTACAAGGACTTGCCACCTGGGAAAGAGCTCTTCTTTACAACAACGGAATC TTTACTAGATTCCAAGTCATTCGCATTCCACGCGGTGGGTCCACTAGTCCGAAGCTGTAACAATGTGATCACTCCTTCGAGTCGCGACTCGTTCATCGGT CTATGGGACGATTGTGTCAATCGTCTCATCTTGAAATTCTGCTCTCTAGATCTCATTCGAAAGTCACCATCCTCGTTTTCATCATCGTCGTCGTTGCAAG ATCAATGGCCCAATGTGACCGGATTCGTGAAGGGGTTATGCTTGTGGAGAGGGGAGGAGGTTGACCGATTGACAGAAGGTCACGAGTTCGAACCATCATC ATCCATAGCCGAGAAGCTGATGTGGACGTACCACGACTTGCCTTACGTGTTAGGGTACTACGCAGTAGGCCACACGGTAACGTTTTGCGCGATGTGCCGA TCTTTGTCCTCTTCTTCTTCCTCATCCCAACAAATCATCCGGACCGACCTCTACTCACTGGACCTCTCCTCTCCCTCCGACCGGCTTAGAGCGTTAGTCC CATGCTACCGAATTGCTGGGTTGCTAACGCTCTTAGCCGATCGCTGCTCTACCAAAGCCTACAGCGACTTCGAGCGGTGGTTCGGGGCAGAATCAAATGG CAGCGTATTGATGGAAGCGACTCCCAACACGATGACTCGGTACTACCCGAGTAGGAGGAAGTGGTCAGCAGTTAAGGAGATCTACGACATCTTGGATCAA AGGATCCCGCATTCGGAGTTCATTGCCCACTCGTCGGAGAAAGACTTAGCCTTAGTGTTCAAACCGAGAGGTTTGCGATTCAAGCCGGCCAACTGTGAGC AACTCGTCGAGTCTTTGATTTACATTACCAAGGCTTTGGTTGCGTTACACGACTTGTCGTTTATGCACCGGGACTTAAGCTGGGAGAAGGTTATGTTAAG GGCTAACACGACGGTGGAGAATGGGTCGGGTGGTTCGGGTCAGGAGTGGTTCGTGTGTGGGTTCGATGAGGCAGTTGCTGCTCCCGCACTGTGTCCACGA GAGGGAGGTGGGAGTGGGAGGCACGCGCCAGAGATGGGGAGAGGGTTGCATGGAGTGAAGGTTGATGTTTGGGGAGTTGGGGAATTGGTTAGGACTTGCG GGTTGTTTGGGTCTGGTTCTGATTTGAGTTCGGGTTTAGGTTCGGGATTGGGTTCGGGTGGGGTGGTGAAGTTGCTTAGGGATCTGCAGAATAGGTGTTT GGATCAGAATCCAGAGGTGAGGCCTACCGCAGCAGATTGTTACCATCACTTGTCGCAGCTTCAGTCGATGCAACAACAGGTTTGA
AA sequence Show only first row Show all	>Lus10031672 pacid=23180681 polypeptide=Lus10031672 locus=Lus10031672.g ID=Lus10031672.BGIv1.0 annot-version=v1.0 MSDHKGEPTKKQPSQQQQHSSSSSPKESPPPHLHRHPPFNISPPPLYIPSVQFDPTTATNTKRPRFSSTTSSSSQWKLLSPTHPKPPAVTGGGEHATTTT AATGSSSDTATSSPTHSPPVPSLSTNKPAAESPADDQIQTQTHQTRKGKFVSPVWKPNEMLWLAKAWRAQYNNNNNHSQSSSSIDYDVIQSTATRGKTRA EKDREVAAVLNRNGINRDAKTAGTKWDNMLGEFRKVYEWERGGERDRIGKSYFRLSPYERKLHRLPASFDEEVFDELSQFMGSRIRSAPSSRGAGLLVSS TTSSGEDPKNIVSGTTITPARSLLLPPPPFKDDDFLNLPLCSGRSSKQLVMSGGAMEPYNFHGLRSINTSLLGFDSSTMEPAGVGSWSMSNSKELRRIGK VRMTWEESVSLWAEEVEHHRGRIKVQGSSFLNADELMFVDDSMVACTMESFEDGAGGAPLALRGFSVDKFVPGQHIKVFGRKKSKSSPSTSAPLTEIRPA MATVEYQDPTEYYMSCLRAPPPTLPTLFELSWYIQEPPPEELRFPIRKDVYKDLPPGKELFFTTTESLLDSKSFAFHAVGPLVRSCNNVITPSSRDSFIG LWDDCVNRLILKFCSLDLIRKSPSSFSSSSSLQDQWPNVTGFVKGLCLWRGEEVDRLTEGHEFEPSSSIAEKLMWTYHDLPYVLGYYAVGHTVTFCAMCR SLSSSSSSSQQIIRTDLYSLDLSSPSDRLRALVPCYRIAGLLTLLADRCSTKAYSDFERWFGAESNGSVLMEATPNTMTRYYPSRRKWSAVKEIYDILDQ RIPHSEFIAHSSEKDLALVFKPRGLRFKPANCEQLVESLIYITKALVALHDLSFMHRDLSWEKVMLRANTTVENGSGGSGQEWFVCGFDEAVAAPALCPR EGGGSGRHAPEMGRGLHGVKVDVWGVGELVRTCGLFGSGSDLSSGLGSGLGSGGVVKLLRDLQNRCLDQNPEVRPTAADCYHHLSQLQSMQQQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	1.0	0.9969
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	2.0	0.9964
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	2.8	0.9946
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	3.0	0.9961
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	5.3	0.9862
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	5.5	0.9893
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	6.0	0.9697
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	6.0	0.9833
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	6.0	0.9863
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	6.3	0.9858

Compare expression of checked genes

Lus10031672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.