Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 337 / 2e-114 Protein kinase superfamily protein (.1) AT3G15890 325 / 8e-110 Protein kinase superfamily protein (.1) AT3G24550 270 / 1e-84 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G60800 269 / 2e-84 NIK3 NSP-interacting kinase 3 (.1) AT3G24540 265 / 2e-84 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G26940 263 / 2e-84 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT4G34440 266 / 3e-83 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G59110 260 / 2e-82 Protein kinase superfamily protein (.1) AT3G18810 264 / 4e-82 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT2G42960 257 / 2e-81 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001323 [exp] 442 / 9e-155 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10006985 [exp] 439 / 3e-154 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10019988 [exp] 434 / 1e-151 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10011490 [exp] 427 / 7e-150 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 404 / 2e-140 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10035071 [exp] 268 / 5e-84 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 267 / 1e-83 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 268 / 3e-83 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10001423 [exp] 262 / 3e-83 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134500 [exp] 565 / 0 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 551 / 0 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 443 / 1e-155 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 432 / 2e-151 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 421 / 4e-147 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 271 / 4e-85 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.011G049600 [exp] 263 / 4e-85 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 266 / 6e-84 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 264 / 9e-84 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.009G115200 [exp] 267 / 1e-83 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031673 pacid=23180725 polypeptide=Lus10031673 locus=Lus10031673.g ID=Lus10031673.BGIv1.0 annot-version=v1.0 ATGATGCACAAGTGTTTCTGTTGTGTCTTCCCCGGAAGCAAATCCGACGCTAATCTCAGTTTAGTGGGCGAAGGAAAGGATTACCCTTGGGATATCTACA CTTTAAAAGAACTTCTCTATGCTACCAACAATTTCCACAATGATAACAAGATCGGAGAAGGTGGTTTTGGAAGTGTTTATTGGGGCAGGACTAATAAAGG CGTCGAGATAGCGGTAAAAAGGCTGAAGGCGATGACAGCAAAGGCGGAGATGGAGTTCGCCGTGGAGGTGGAGATACTAGGGAGGGTGAGGCACAAGAAC TTGCTGGGATTAAGAGGGTTTTATGCCGGCGGGGACGAGAGGCTAATCGTGTATGATTACATGCCTAATCACAGCTTAATCACTCACCTCCATGGCCCAC TTGCTGCCGAGTGCTTGCTTGATTGGCCGAGGAGAATGAGCATAGCCATCGGCTCAGCTGAAGGGATAGCGTATTTACATCATGAGGCAAGTCCACACAT AATCCACAGGGATATAAAAGCTAGCAATGTCCTCCTCGACCCGGATTTCCAAGCCAAAGTGGCCGATTTTGGTTTCGCAAAGCTGATCCCGGACGGGGTC ACCCATTTAACCACTCGAGTCAAGGGTACACTCGGCTACCTTGCTCCCGAGTATGCCATGTGGGGCAAAGTCTCTGATAGTTGCGATGTCTACAGTTTCG GAATCCTTCTTCTCGAGCTCATTAGCGCCAAACGCCCCTTAGAGAAGCTTTCAGGTGGCGTGAAGCGGGACATTATACAATGGGTGACTCCATACATCCA AAAGGGTGCGATCGACCATATAGCAGACCCGAGGTTAAAGGGTAAATTTGACCGTTCACAATTGAAGCTAGCGATTATGGTGGCAATTCGATGCACGGAC TCAAACCCTGAGAATCGACCTGTGATGTCGGAAGTTGTCGAGTGGCTCAAGGGTAACTTGTCGGGAAGGCGGCCCCCACCTAAGCAAGTAGAGGATGAGA TGGATGAGAAGGATGACGAGGAAGAGGAAGAGACAGATGATACAAATGAGAATGTGGAAGCTCAAAAGATTAGGATTGAGAAGTCGTTTGTAAGACGGAA TGTTCGAGCCAACTCCAATACGAGGTGA
AA sequence Show only first row Show all	>Lus10031673 pacid=23180725 polypeptide=Lus10031673 locus=Lus10031673.g ID=Lus10031673.BGIv1.0 annot-version=v1.0 MMHKCFCCVFPGSKSDANLSLVGEGKDYPWDIYTLKELLYATNNFHNDNKIGEGGFGSVYWGRTNKGVEIAVKRLKAMTAKAEMEFAVEVEILGRVRHKN LLGLRGFYAGGDERLIVYDYMPNHSLITHLHGPLAAECLLDWPRRMSIAIGSAEGIAYLHHEASPHIIHRDIKASNVLLDPDFQAKVADFGFAKLIPDGV THLTTRVKGTLGYLAPEYAMWGKVSDSCDVYSFGILLLELISAKRPLEKLSGGVKRDIIQWVTPYIQKGAIDHIADPRLKGKFDRSQLKLAIMVAIRCTD SNPENRPVMSEVVEWLKGNLSGRRPPPKQVEDEMDEKDDEEEEETDDTNENVEAQKIRIEKSFVRRNVRANSNTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	0	1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	3.9	0.8564
AT3G14680		CYP72A14	"cytochrome P450, family 72, s...		Lus10019184 [exp]	4.0	0.8532
					Lus10038105 [exp]	4.7	0.8498
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	7.1	0.9075
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	9.0	0.8274
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	9.5	0.8478
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10021372 [exp]	9.6	0.8246
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	9.8	0.8104
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	14.3	0.8486
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	16.2	0.8658

Compare expression of checked genes

Lus10031673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.