Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 372 / 1e-123 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25140 370 / 5e-123 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26310 360 / 4e-119 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 359 / 1e-118 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 357 / 6e-118 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G25180 356 / 9e-118 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G48310 353 / 1e-116 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G25120 353 / 3e-116 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13080 350 / 4e-115 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26290 350 / 5e-115 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012879 [exp] 712 / 0 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10039063 [exp] 552 / 0 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10038796 [exp] 516 / 4e-180 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 454 / 1e-155 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 441 / 2e-150 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10019157 [exp] 432 / 5e-147 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10027397 [exp] 416 / 9e-145 AT3G48310 145 / 1e-40 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10029035 [exp] 416 / 2e-140 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10002885 [exp] 415 / 5e-140 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 462 / 1e-158 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 435 / 2e-148 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 434 / 5e-148 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 433 / 2e-147 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 433 / 2e-147 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 432 / 3e-147 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 431 / 1e-146 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 413 / 8e-140 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.001G365100 [exp] 413 / 1e-139 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G090000 [exp] 409 / 5e-138 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031674 pacid=23180650 polypeptide=Lus10031674 locus=Lus10031674.g ID=Lus10031674.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTTACCTTCACCACCGTGAAACCAACAACAACCCCCAACAGATCCAATGCAGCTGTTCCCTTCCGCCGCATTTCCACCAGAGTCTCCTGCC GGAAACAACCTCCGTCGACGACAGCGGCGGCGGTGGTCGAGGCGATCCTCCCACCAGGGCCGGCAAAGCTCCCACTGATCGGAAACTTACACAACATGAT CGGAGCTCTCCCACACGAAGCTCTACAAACCCTATCAAACCAATACGGCCCGATAATCCACCTCCAGCTCGGAGAGCTCTCCGCCGCCGTGATCTCCACT CCCAAGATGGCACAAGAGATCATGAAAACCCACGACTTGGTCTTCGCAGACCGCCCCCGAATCCTGGCGTCCGAGGTTGCCACGTGGGGAAGTCAGGACA TCGCTTTCTCCCCACACGGCGATTACTGGATGCAAATGAAGCGCATTTCCATGACCGAGCTTCTGGGTCCGAGAAAGGTCCAGTCTTTGAGAGGAATCCG AGAGGAAGAGGTTTCGAATTTCGTGGATTCGGTTCGGAGGAGTTCGCTGGCGGGGGAATCCGTGAACATCACGGAGATGATCATGAATCTGATGAATTCC ATCACTTGCAAGACTGCGTTTGGTTACAAATGCAGCGATCAGGATGAGTTCATGGAGCTTACTAAAGAGGCCGTAATCGCTGCGGCAGGGTTTAGCATAG TTGATCTGTACCCTTCTCTGGGGTTTCTTCAAGGGATCACCGGGATGAAATCGAGGCTGCTCAGACTCCGCGATGGGCTGGACCGTATTTTCGATAAGAT CATCGAAGAACACAAACGGAATGGAGGAGATAAAGAAAACCAAGAAGAAGATTTAATGGATGTTCTTCTGAGGCTACAGGGGACACCAGGGTTCAAATGT CCGATCACAACTACGAACATCAAGGCAGTACTAGTGGATCTGTTCATCGCCGGAACGGACACTTCATCGACGACAGTGGAATGGGTAATGTCGGAGCTGA TGAAGAACCCACGAGTGATGAACAAGGTCCAATCCGAGATCCGACAAGCTGCCAAGGGGAAAACAACAATCAACGAAGATGACATCAAGGATTTGCCTTA CTTCAATTCAGTCATCAAAGAGACGTTCAGACTCCACCCGCCGGCGCCACTGCTACTGCCAAGGGAATGCAAAGAGGACTGTGTGGTCGGCGGGTACAAA ATCCCAAAAAAGACTAAAGTGATCGTCAATGCTTACGCGATAGGCCGGGATCCTGAGACCTGGCAGGATCCCGAGAGTTTCGTTCCGGAGAGATTCGATG GGAGCGAGATCGATTTCAAAGGGATGCATTTCGAGCTGATACCGTTCGGTGCTGGGAGGAGGATATGCCCGGGGATTGCGTTCGGGATGGCGAATGTCGA GCTCCCCGTGGCGAAATTGCTCTGCCATTTTAACTGGGGGTTCGCTGACGGTGAGACGGCTGATAGCTTTGACATGTCGGAGTCTTTTGCTGCCACTGTC GGGAGGAAGTTCCCGTTGAAATTGGTGCCAACGGAGTTTATTGATTGTGATCATGATGCCCAAGTTCATGAAAGGTCTGTTGCTGCTACTGTGAATTGA
AA sequence Show only first row Show all	>Lus10031674 pacid=23180650 polypeptide=Lus10031674 locus=Lus10031674.g ID=Lus10031674.BGIv1.0 annot-version=v1.0 MASLTFTTVKPTTTPNRSNAAVPFRRISTRVSCRKQPPSTTAAAVVEAILPPGPAKLPLIGNLHNMIGALPHEALQTLSNQYGPIIHLQLGELSAAVIST PKMAQEIMKTHDLVFADRPRILASEVATWGSQDIAFSPHGDYWMQMKRISMTELLGPRKVQSLRGIREEEVSNFVDSVRRSSLAGESVNITEMIMNLMNS ITCKTAFGYKCSDQDEFMELTKEAVIAAAGFSIVDLYPSLGFLQGITGMKSRLLRLRDGLDRIFDKIIEEHKRNGGDKENQEEDLMDVLLRLQGTPGFKC PITTTNIKAVLVDLFIAGTDTSSTTVEWVMSELMKNPRVMNKVQSEIRQAAKGKTTINEDDIKDLPYFNSVIKETFRLHPPAPLLLPRECKEDCVVGGYK IPKKTKVIVNAYAIGRDPETWQDPESFVPERFDGSEIDFKGMHFELIPFGAGRRICPGIAFGMANVELPVAKLLCHFNWGFADGETADSFDMSESFAATV GRKFPLKLVPTEFIDCDHDAQVHERSVAATVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	1.0	0.9530
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	4.2	0.9040
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	4.5	0.8433
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	5.5	0.8688
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	5.9	0.8536
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031738 [exp]	7.9	0.7680
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	17.0	0.7757
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	17.5	0.8604
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	18.3	0.8473
AT3G06240			F-box family protein (.1)		Lus10018106 [exp]	21.2	0.8345

Compare expression of checked genes

Lus10031674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.