Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25400 86 / 5e-21 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 83 / 1e-19 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 76 / 4e-16 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 73 / 2e-15 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 63 / 7e-12 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 63 / 1e-11 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 60 / 6e-11 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 42 / 0.0002 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027396 [exp] 313 / 1e-108 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 81 / 5e-18 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 79 / 2e-17 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 78 / 7e-17 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 75 / 5e-16 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 75 / 8e-16 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042128 [exp] 49 / 4e-07 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 47 / 1e-06 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024812 [exp] 43 / 7e-05 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134400 [exp] 130 / 6e-37 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 118 / 2e-32 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 94 / 6e-23 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 86 / 6e-20 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 84 / 3e-19 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 65 / 1e-12 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 62 / 1e-11 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 57 / 5e-10 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 42 / 9e-05 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031675 pacid=23180598 polypeptide=Lus10031675 locus=Lus10031675.g ID=Lus10031675.BGIv1.0 annot-version=v1.0 ATGTTCTCGTTCACGTATGATGCTCCCCAACAACAGGAAGATTGTGTTGTCGACGATCTTCTGATCTGGGCAGCTTCCAGCACCGCCGCCGCCGCCAATG ATTACACCCACTACCCACCACCACCACCACCACCAGTAATACCACAACAACCTTATAAAGCGGGAGATGAAACCCTCGAAACCATCGCCCTCGGTTCGGG CCGCAGCGGCGGCAGGGATGAGGATAGGAAGCTGAGCCGGAAAGAGATCGAACGGCGGAGGAGGCAGCAGATGTCGGATCTCCATTCTTCGCTCATCTCC CTCTTGCCCCAACCCCCCCGCAAGGGAAAGAAGTCGTCGCTGTCGGATCAAATGGGCGAGGCGGCTAACTACATCAACCACCTGAAGGACAACGTTCAAG AACTGAGCAATAGAAGAGACAATCTTCTCAAAGGAACCACAAGGGCATTGCCGTCATCCAACAAAAATTCTTCTTCCTCCGCCACTTCAAGTAACTCCGG CGTGGACAGTGCTACCAACTCGGTGACCATCCGGCAGCGTTTCGACGGGGTGGAGGTGGTGATAAGCCGCGGCCGGTTTGTACTTTCGAGGGTTATGGAA GCAGTAGTAGAAGAAGGGTTTGATATCATGAGTTGTATTTCAACTCAAATAGGTGGACGCTTCTACAACACCATGCAGTGCCAGGTACACGTTCATAATA CGAAACTACTACGGTAG
AA sequence Show only first row Show all	>Lus10031675 pacid=23180598 polypeptide=Lus10031675 locus=Lus10031675.g ID=Lus10031675.BGIv1.0 annot-version=v1.0 MFSFTYDAPQQQEDCVVDDLLIWAASSTAAAANDYTHYPPPPPPPVIPQQPYKAGDETLETIALGSGRSGGRDEDRKLSRKEIERRRRQQMSDLHSSLIS LLPQPPRKGKKSSLSDQMGEAANYINHLKDNVQELSNRRDNLLKGTTRALPSSNKNSSSSATSSNSGVDSATNSVTIRQRFDGVEVVISRGRFVLSRVME AVVEEGFDIMSCISTQIGGRFYNTMQCQVHVHNTKLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	1.0	0.9164
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	1.4	0.8915
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	5.7	0.8869
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	11.7	0.8720
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	13.4	0.8610
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	16.2	0.8896
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Lus10038000 [exp]	17.4	0.8325
AT1G23850			unknown protein		Lus10014532 [exp]	19.8	0.8018
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017866 [exp]	22.8	0.8396
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	26.2	0.8302

Compare expression of checked genes

Lus10031675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.