Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51780 120 / 5e-34 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 118 / 8e-33 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 114 / 4e-31 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 109 / 7e-29 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 106 / 1e-28 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 95 / 2e-23 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 46 / 5e-06 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56970 46 / 8e-06 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 45 / 2e-05 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 43 / 7e-05 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027395 [exp] 283 / 8e-97 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 116 / 2e-31 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 104 / 9e-27 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 103 / 1e-26 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 76 / 2e-16 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 76 / 2e-16 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 66 / 2e-13 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 57 / 9e-10 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014938 [exp] 50 / 3e-07 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132000 [exp] 120 / 2e-33 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 112 / 3e-30 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 111 / 1e-29 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 96 / 5e-24 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 92 / 3e-22 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 59 / 1e-10 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G074500 [exp] 56 / 2e-09 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 53 / 2e-08 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 50 / 4e-07 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 46 / 7e-06 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031676 pacid=23180763 polypeptide=Lus10031676 locus=Lus10031676.g ID=Lus10031676.BGIv1.0 annot-version=v1.0 ATGTTCCCTCATAATTCCAAGCAAATTAGCTTTGATGCTAATGATAACAATCAAGAAGAAGAAGATGACCCACTAATCTTCTTCCCATCTGATTTCACCT CACCCTTTACTTTTAACCCACCGCAAGGCCATCTCATCTTTCAGCAGCCGCCTCCTCCCCCGCCGCCGCCGGCAGCGTTCCAGGATCCACCTCCGCCGCT GCCGCCGCCAACCCAAAACCTGAGGAACATAGCTCATAGAGGTGTGGAACGACAAAGGAGGAAAGAGATGGCTGACCTTCATGGCTCTCTTAGAAGCTTG CTTCCTTCCCACTATATTAAGGGGAAGAGAGCGGCATCAGATCAAATGCAGGCGGCTGTAGATTACATTAAAGAGCTCCAAACAAGGACCAAACAACTTG GTGTGAAGAGAGATGAGTTAAAGACTAATGCCGTCTCCAATACTATTTATGCCGTCGCTAATACTAACCATGAAGAAGCCACCTCTAGCTCAAGGCAAGC CAACGCCGGTGGTGCTGTAGTATTGGTTCGTCGTTGTTTGATTGGGATGGAGGTCGTGATTAATGGTAGTCATGGTGATCACCATCAACTCTCTAGAGTG TTGAAGTTGCTCATGGACCAAGGGATCAACGTTGTCACGATTGATTCTGTCCGAGTGAACGATAGGTTAATACACACCATTCAATCCGAGGTAACTCACA AATAA
AA sequence Show only first row Show all	>Lus10031676 pacid=23180763 polypeptide=Lus10031676 locus=Lus10031676.g ID=Lus10031676.BGIv1.0 annot-version=v1.0 MFPHNSKQISFDANDNNQEEEDDPLIFFPSDFTSPFTFNPPQGHLIFQQPPPPPPPPAAFQDPPPPLPPPTQNLRNIAHRGVERQRRKEMADLHGSLRSL LPSHYIKGKRAASDQMQAAVDYIKELQTRTKQLGVKRDELKTNAVSNTIYAVANTNHEEATSSSRQANAGGAVVLVRRCLIGMEVVINGSHGDHHQLSRV LKLLMDQGINVVTIDSVRVNDRLIHTIQSEVTHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	2.0	0.9381
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	2.2	0.9385
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	2.8	0.9300
AT2G42760			unknown protein		Lus10005429 [exp]	3.0	0.9354
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	4.2	0.9237
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	4.5	0.9288
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	5.3	0.9117
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	6.0	0.8988
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	6.0	0.9095
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	6.9	0.9104

Compare expression of checked genes

Lus10031676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.