Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45590 220 / 2e-66 Protein kinase superfamily protein (.1) AT4G25390 207 / 5e-62 Protein kinase superfamily protein (.1.2) AT5G51770 200 / 3e-59 Protein kinase superfamily protein (.1) AT1G80870 150 / 1e-40 Protein kinase superfamily protein (.1) AT1G29720 89 / 2e-19 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 89 / 2e-19 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 89 / 3e-19 Leucine-rich repeat transmembrane protein kinase (.1) AT3G25560 87 / 5e-19 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 86 / 2e-18 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 85 / 4e-18 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027393 [exp] 454 / 2e-157 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041395 [exp] 238 / 2e-73 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10026069 [exp] 124 / 1e-31 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 121 / 2e-30 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10036534 [exp] 94 / 1e-23 AT2G45590 161 / 1e-47 Protein kinase superfamily protein (.1) Lus10006985 [exp] 90 / 4e-20 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 90 / 5e-20 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10030591 [exp] 90 / 1e-19 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 89 / 1e-19 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134100 [exp] 323 / 4e-106 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 310 / 8e-101 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.002G150800 [exp] 248 / 3e-77 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 245 / 3e-76 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 145 / 5e-39 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 142 / 9e-38 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 92 / 2e-20 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 92 / 2e-20 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072566 [exp] 89 / 1e-19 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072691 [exp] 89 / 1e-19 AT1G29750 514 / 2e-174 receptor-like kinase in flowers 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031678 pacid=23180804 polypeptide=Lus10031678 locus=Lus10031678.g ID=Lus10031678.BGIv1.0 annot-version=v1.0 ATGGAGTGGATTGGAACGGAGATAAAGAGAGAGAGGCCGAGCAACGATTGGATTAGTTCAACTCCATCAACCAGCCATCAGAAACAGCAGCCGATTAGCA AGAAGAAGAAGAAGAAGAGATTGGATTGGTGGGTGTCGCTAGATGAAGAAAAGGAAAAGAGGATTTTGAAGAAGGAAAGGAAACGAGCTCCGAGGGAATG GTGGAAGGAGGAGTATTGCGACGAGCTCGAGAAGAAGAACAAGAAGAAGCAGAAGAAGCTGAAGAACGAATTAGGAGTTGCAGAACAAGATTGGTGGCCT GGAGATTACGATGAAGAATCACACGGCAAGAAGAACAAGAAGTTCAAGAAGAACAAAAGCAGAGGAGGTAGTCAAGGAAGCATAGATTGGTTCAGTGGAG AGCTCTTCAGAGGAAGATTCAACAGTCATGATTCAATGAGTGGAGATCTAACCATACCAAAGAGCGGCGGGGTAAGTAGTACTCCGAGCATGAGAGGGAC AGTTTGCTACGTAGCTCCGGAGTACGGAGGGGGCGAATTGTCGGATAAATCTGACGTGTACAGCTTCGGGGTGTTGGTTTTAGTTGTGATAGCAGGGAGG AGGCCGTTGCAGGTGACGAATTCGCCAATGGCGGAGTTTCAAAGGGCGAATTTGATACATTGGGCGAGAAATTTAGCGAGGAGTGGGAAGATTATTGATC TTGTTGATCAATCTTTAAAGGGTTTGGATGCTGAACAAGCTACGTTGTGTATTACTGTGGCGTTGCTTTGCTTGCAGAAGTCTCCGGTGGGGCGGCCGTC GATGCAGGAGGTTGTTGGGATGCTCAATGGTAGTATAGAGGTTCCTCCATTGCCTACTGAGTTTTCGCCATCTCCTCCTTCGCGATTTCCGTTCAAATCG AGAACGCGGAGGAGCAAGGCCGTGTAA
AA sequence Show only first row Show all	>Lus10031678 pacid=23180804 polypeptide=Lus10031678 locus=Lus10031678.g ID=Lus10031678.BGIv1.0 annot-version=v1.0 MEWIGTEIKRERPSNDWISSTPSTSHQKQQPISKKKKKKRLDWWVSLDEEKEKRILKKERKRAPREWWKEEYCDELEKKNKKKQKKLKNELGVAEQDWWP GDYDEESHGKKNKKFKKNKSRGGSQGSIDWFSGELFRGRFNSHDSMSGDLTIPKSGGVSSTPSMRGTVCYVAPEYGGGELSDKSDVYSFGVLVLVVIAGR RPLQVTNSPMAEFQRANLIHWARNLARSGKIIDLVDQSLKGLDAEQATLCITVALLCLQKSPVGRPSMQEVVGMLNGSIEVPPLPTEFSPSPPSRFPFKS RTRRSKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	0	1
					Lus10003603 [exp]	8.1	0.8936
AT1G31870			unknown protein		Lus10033140 [exp]	14.8	0.8450
AT2G33320			Calcium-dependent lipid-bindin...		Lus10032780 [exp]	19.4	0.8296
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	29.1	0.8383
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	36.1	0.8325
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10007899 [exp]	58.1	0.8364
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10036744 [exp]	72.9	0.8181
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	83.8	0.8272
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	94.9	0.8148
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	98.9	0.8181

Compare expression of checked genes

Lus10031678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.