Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25390 267 / 2e-86 Protein kinase superfamily protein (.1.2) AT5G51770 238 / 8e-74 Protein kinase superfamily protein (.1) AT2G45590 215 / 7e-65 Protein kinase superfamily protein (.1) AT1G80870 161 / 6e-45 Protein kinase superfamily protein (.1) AT3G58690 153 / 1e-43 Protein kinase superfamily protein (.1) AT5G15730 137 / 1e-37 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT2G25220 137 / 2e-37 Protein kinase superfamily protein (.1.2) AT3G20530 136 / 2e-37 Protein kinase superfamily protein (.1) AT1G79620 140 / 3e-37 Leucine-rich repeat protein kinase family protein (.1) AT4G02010 139 / 4e-37 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027393 [exp] 500 / 1e-175 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036533 [exp] 218 / 4e-67 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10041395 [exp] 216 / 4e-65 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10021003 [exp] 149 / 1e-41 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026069 [exp] 151 / 3e-41 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10033606 [exp] 145 / 1e-40 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10041026 [exp] 144 / 7e-40 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10017647 [exp] 141 / 3e-39 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10026335 [exp] 142 / 5e-39 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134100 [exp] 318 / 3e-104 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 313 / 2e-102 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.002G150800 [exp] 227 / 1e-69 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 225 / 8e-69 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 163 / 1e-45 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 159 / 6e-44 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 148 / 8e-42 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.004G232400 [exp] 149 / 2e-40 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 146 / 2e-39 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G025700 [exp] 143 / 2e-39 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031679 pacid=23180739 polypeptide=Lus10031679 locus=Lus10031679.g ID=Lus10031679.BGIv1.0 annot-version=v1.0 ATGCCATCCCGTTCAATTCCTCCCCCGTCACCGTCGCCGTCTCCACTCACCCCCCACCACCACCACTTCCCTTCCCAACTCCTCCCTCCGCTGGGCGCCG CCACCGCCGCCTTCTCCGTCTTCCTCATCTTCGCCGCCTGCTTCCGAAAGCTCACCCACAAGCGCACAGTCCCTTCCGACTCCAAGCCGCCGCACCGGTT CCCTCACTCCGCTCTCCGCCGCGCCACCGACGGGTTCTCCCCCTCGCTCCGGATCGGGCAGGGTGGGTTCGGGTCAGTCTACCGGGGCACTTTACCGGAC AAGCAGCTCGTCGCCGTCAAAGTCATGGACTCCGGATCCTTACAGGGGGAGAGAGAGTTCCAGAACGAGCTCTACTTCGCGTCGAAATTACATTCGCCTT ATGTAGTAACCGCCCTCGGGTTTTCCTCCGATCGGAAACGGAGGACTATGCTTTTGATTTACGATCTCATGCCGAATGGGAACTTACAGGACGCTCTCCT CCAGAGGAAGTGCCCTGAGTTGTTTGATTGGAAACAGAGGTTTAGCGTAGTCGTTGATGTCGCTAGAGGTCTTGAGTATCTTCACTGTTTGGATCCGCCG GTTATCCACGGCGATGTGAAGCCGAGTAACGTCCTGCTCGATCAGTTCTTCTCCGCCAAGATCGCCGACTTCGGATTAGCCTGGGAGAATCAAAATCAGA ATAAGAACGGCGAATCGGAGGTCCAAAACGGAGAATCAGAGGCCAAGAAGGCCGAATTAGCGGCGGAAGATTGCGGATCTGTGATTGAAACGGAGAGCGT GACGACGACTGCGGCCGCGTTCGAGGAGCTGGATCAGTCGCCGGAGAGTTTCATGCTCCGGTGA
AA sequence Show only first row Show all	>Lus10031679 pacid=23180739 polypeptide=Lus10031679 locus=Lus10031679.g ID=Lus10031679.BGIv1.0 annot-version=v1.0 MPSRSIPPPSPSPSPLTPHHHHFPSQLLPPLGAATAAFSVFLIFAACFRKLTHKRTVPSDSKPPHRFPHSALRRATDGFSPSLRIGQGGFGSVYRGTLPD KQLVAVKVMDSGSLQGEREFQNELYFASKLHSPYVVTALGFSSDRKRRTMLLIYDLMPNGNLQDALLQRKCPELFDWKQRFSVVVDVARGLEYLHCLDPP VIHGDVKPSNVLLDQFFSAKIADFGLAWENQNQNKNGESEVQNGESEAKKAELAAEDCGSVIETESVTTTAAAFEELDQSPESFMLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25390			Protein kinase superfamily pro...		Lus10031679 [exp]	0	1
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	16.8	0.8199
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	24.5	0.7492
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	29.2	0.7921
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	41.3	0.7859
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	45.2	0.7241
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	51.4	0.7192
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	62.1	0.7645
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	66.4	0.7497
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	75.3	0.7511
AT3G28430			unknown protein		Lus10018448 [exp]	87.9	0.6980

Compare expression of checked genes

Lus10031679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.