Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28100 469 / 4e-162 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027390 [exp] 843 / 0 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1) Lus10021427 [exp] 460 / 9e-159 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1) Lus10016140 [exp] 449 / 6e-155 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1) Lus10027391 [exp] 159 / 3e-47 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131400 [exp] 721 / 0 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1) Potri.015G133500 [exp] 712 / 0 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1) Potri.009G006900 [exp] 451 / 7e-155 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01120 [flax] [poplar] Alpha_L_fucos Alpha-L-fucosidase
Representative CDS sequence Show only first row Show all	>Lus10031681 pacid=23180801 polypeptide=Lus10031681 locus=Lus10031681.g ID=Lus10031681.BGIv1.0 annot-version=v1.0 ATGGCTCTTATCAATAATCCACACTTCTCACTACTCCTATCCTTATCATCCCTCTACCTCCTCCAAAACCTCATCGCCGCCGCCGCCGCCTCGAAATACA ACGTGGCAACCCCCCCGCTGCCGGTGCTACCCTTGCCGTCCTTCTCCCAGCTCAAATGGCAGCAAAGGGAAATCATCATGTTCTTCCACTTCGGAGTCAA CACCTTCACCGACTCCGAATGGGGCACCGGCCACGAGTCCCCCTCCCTCTTCAACCCGACGGGGCTCAACGCCGGCCAGTGGATAGACGCCGCCTCCGTC GCCGGTGTTTCGTTAGTGATTCTCACGGCGAAACACCACGATGGGTTCTGCCTGTGGCCGTCCAAGTACGCCGACCACTCTGTTGCGGCCAGCCCTTGGA AGGGTGGACGGGGTGACGTGGTCGGAGAACTCGTAGGCGCCGCGGAGAAGCACGGCGGAGACGTTGACGTTGGGATTTATTTGTCGCCGTGGGATAGGCA CGATAGGAGGTACGGGAAGGAGGTGGAGTATAATGAGTATTACTTGGCGCAGTTACAAGAGCTTCTTACCAAGTACGGGAACGTTAAGGAGATATGGTTC GATGGGGCAAAAGGCTCAAACGCACCCAATATGTCGTACTACTTCTCGGACTGGTTCGCGACGGTGAAGGAGCTACAGAGCACCATCAACATATTCTCCG ACGCCGGACCGGACGTCCGGTGGGTAGGCAACGAAAAAGGGTTCGCCGGAAAAACTTGCTGGTCCACCATCAACCGGACGGCGTTGTCCATCGGGAACGA GAGTATCGTTGACTACCTAAACAAAGGAGACCCCAAGGGAACGGACTGGCTACCAGCAGAATGCGACGTCTCGATCCGACCAGGCTGGTTCTGGCACAAA TCCGAATCTCCTAAAAAGCTTAGCCAGCTCCTCGAGATCTACTACAACTCTGTTGGCCGCAACTGCCTGCTCCTCCTCAACGTGCCACCAAACACCACAG GGCTCATTTCCGAGACCGACGTCAACAGACTACGAGAATTCAGAGCCGCGATTGACACCATCTTTTCGACCAACTTGGCTCATCACCAAGGATGCTCAAC CAAGGCTAGTAGCGAAAGGGGAGGAAAGAGTGGAGCGTTCGGTGCTGATAGGGTGTTGGACAACGACCATTTGTGGACGTATTGGGCCCCGAGCGGCCGA GAAAGAAAAGGGGAGTATTGGATTGAGATAAAGTGTGGTGGTGGCGGGTTGAAGAATTTCAATGTGATTAGGGTTCAAGAGGCGATTGGGTTAGGGCAAA GGGTTAAACGACATGAGGTTTATGTGGATGGTGTTAGAGTTGCTCAAGGGACGACAATTGGGTACAAGAGGCTACATAGGATTGGAAAGGGAGAGCCATT TAGTGGGGAGATTGTGAGGGTTAAAGTGTTGGAATCTAGAGGCGTGCCTTTGCTTTCTTCGATTGGGATTCACTACGACCCTTATTGGCATCCTTAA
AA sequence Show only first row Show all	>Lus10031681 pacid=23180801 polypeptide=Lus10031681 locus=Lus10031681.g ID=Lus10031681.BGIv1.0 annot-version=v1.0 MALINNPHFSLLLSLSSLYLLQNLIAAAAASKYNVATPPLPVLPLPSFSQLKWQQREIIMFFHFGVNTFTDSEWGTGHESPSLFNPTGLNAGQWIDAASV AGVSLVILTAKHHDGFCLWPSKYADHSVAASPWKGGRGDVVGELVGAAEKHGGDVDVGIYLSPWDRHDRRYGKEVEYNEYYLAQLQELLTKYGNVKEIWF DGAKGSNAPNMSYYFSDWFATVKELQSTINIFSDAGPDVRWVGNEKGFAGKTCWSTINRTALSIGNESIVDYLNKGDPKGTDWLPAECDVSIRPGWFWHK SESPKKLSQLLEIYYNSVGRNCLLLLNVPPNTTGLISETDVNRLREFRAAIDTIFSTNLAHHQGCSTKASSERGGKSGAFGADRVLDNDHLWTYWAPSGR ERKGEYWIEIKCGGGGLKNFNVIRVQEAIGLGQRVKRHEVYVDGVRVAQGTTIGYKRLHRIGKGEPFSGEIVRVKVLESRGVPLLSSIGIHYDPYWHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	0	1
AT1G74160			unknown protein		Lus10034678 [exp]	1.7	0.8824
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	2.8	0.8023
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	6.3	0.8168
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	7.5	0.8285
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	8.2	0.8363
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	10.0	0.7627
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	12.6	0.8127
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	14.2	0.8028
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	15.8	0.7327
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10023885 [exp]	23.2	0.7216

Compare expression of checked genes

Lus10031681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.