Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62190 745 / 0 PRH75 DEAD box RNA helicase (PRH75) (.1) AT5G26742 295 / 2e-89 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 272 / 5e-82 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 271 / 6e-82 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G55150 197 / 1e-55 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 196 / 4e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 194 / 5e-53 DEAD box RNA helicase family protein (.1.2) AT3G01540 193 / 5e-53 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G31970 189 / 3e-52 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 185 / 6e-49 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027388 [exp] 1070 / 0 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 913 / 0 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 902 / 0 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10001057 [exp] 313 / 3e-96 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 286 / 2e-86 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10027268 [exp] 267 / 2e-79 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 264 / 1e-78 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 261 / 4e-78 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 257 / 3e-76 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131000 [exp] 845 / 0 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 840 / 0 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000500 [exp] 308 / 5e-94 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 308 / 6e-94 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 263 / 9e-79 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 251 / 6e-74 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.001G347100 [exp] 194 / 2e-52 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.015G083000 [exp] 189 / 1e-51 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 190 / 4e-51 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 189 / 5e-50 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0221 [flax] [poplar] RRM PF08152 [flax] [poplar] GUCT GUCT (NUC152) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10031683 pacid=23180670 polypeptide=Lus10031683 locus=Lus10031683.g ID=Lus10031683.BGIv1.0 annot-version=v1.0 ATGCCGTCGATTACTCCGGCGAACAATTCAGCGGAGTCCGTCGACAAAAAGGTGAAGAAAATGAAGAAAACCGCTCTCGATTGGCTGGAGTCGGAGACTG GGACGCCGAAGAGCAAGAAGAAGAAGCGTTCGAAGGTCTCCGATCAGGAGGAGGAAGAACCGAAATCGGAGAAGAAGGCGAAGAAGGATAAGAAGAAAAA GAGGAAAGCTGAGGAAATTGAAAATGGAGATGATGATAAGAGCCGGACGAGTTCGGAGCTCGGCGATGAGGCGGAAAAAGAGAAGAAGAAGAGCAAGAAG GTTAAGAAGGCGAAGGAAGAAGAGGTGGAGGAAGAAGCTAAAGCTGTAGACCCTAACGCTGTTACGAACTTCCGAATTTCCGAGCCGTTGAGGCAGAAGC TCAAGTCCAGAGGGATAGAGGCGTTGTTTCCTATTCAGGCGATGACGTTTAATGACGTCCTCGACGGGTGTGATTTGGTCGGGCGAGCTCGTACTGGTCA GGGGAAAACGCTTGCTTTTGTATTGCCGATATTGGAATCTCTAACCAACGGACCTACGAAAGCCGCCAGGAAAATGGGGTATGGAAGGCCACCGAGCGTT CTTGTTCTTCTACCGACTAGGGAGTTGGCAAGCCAGCTCGGGTTTGAGATATTCTTTCAGGTGCATGAGGACTTCAAGGTCTATGGCGAGTCATTGGGCT TGACGTCTTGCTGTTTATATGGCGGTGCTCCTTACAACCCTCAAGAATCGGTTTTGAAGCGAGGGATGGATATAGTTGTGGGAACACCTGGACGCATTAA GGATCACATTGAGCGGGGGAATATTAATTTTAGCTGCTTGGTGTTCCGGGTTCTCGACGAGGCTGATGAGATGCTCCGGATGGGTTTTGTCGAAGATGTT GAGCTTATTCTTGGGAAAGTGGCGGATGTCACGAAGGTCCAGACTCTTCTGTTCAGTGCTACCCTGCCTTCTTGGGTGAAACAGATTTCTTCAAGGTTCC TCAAACAGTCGAAGAAAACCATCGATCTTGTTGGTAATGAGAAAATGAAGGCCAGTATCAACGTTAGACACATTGTGCTTCCTTGTACTCCCTCAGCTAT ACCTCAGCTTATTCCTGATGTCATTCACTGTTATAGCAGCGGAGGTCGCACCATCATATTCACTGAGAAAAAGGAAACTGCTAATCAACTTGCTGGGTTG TTGCCTGGGGCACATCCTTTACATGGAGACATACAACAATCTCAGCGCGAGGTGACACTTTCTGGGTTTAAGTCTGGCAAGTTCATGACCTTGGTTGCCA CAAATTGTGAACCACCTCGTGATGTGGAAGCTTATATTCATCGATCTGGACGCACAGGAAGAGCAGGAAATACTGGGGTTGCTGTGATGCTCTTTGATCC AAGAAGGTCCAATATCTCCAAGATAGAAAGAGAATCCGGAGTGAAGTTTGAACACGTAGCTGCACCTCAGGCTGCCGACATTGCCCAATCAGTTGGCATA CAGGCAGCCGAATCTATAAACAAAGTTTCCGACAGTGTGATCCCAGCTTTTAAGTCTGCAGCAGAGGACATGTTGAGTTCTTCCGGTTTATCAGCTGTTG ATCTCCTCGCGAAAGCACTAGCAAACGCTTCCGGTTATACAGAGATAAAGACGAGGTCAATCCTAACGTCCATGGAGAACCACGTGACTCTACTTCTTGA TGCTGGAAAACCGTTCTACTCTCACTCATATGCTTACAGCATCATGAAGAAATTCCTGCCGGAGGATAAGGTCGAGTCAGTGAAAGGCATAACACTTACA GCCGACGGGAAAGGTGCTGTCTTTGATGTCGCGAGTGTGGACGTGGACACTTTCCTCGCTGGTGCGAGAAAGGTGGGGTACGAGAGCATAGAAGTGGTGA AAACCTTGCCTGCCCTCCAAGAAAGAGACCAGTCGAGAGGGAGATTCGGCGGTGGTGGTGGCCGTGGGTACGGTGGAGATAGGAATAGTGGTGGTGGCTA TAGATTCGGTAGAGGTGGGAGCAGTGGCTTCGGTGGTTGTGGTGGTAGGGGTGGCTCCGGCGGTTGGAGAGGGAGGAATTAG
AA sequence Show only first row Show all	>Lus10031683 pacid=23180670 polypeptide=Lus10031683 locus=Lus10031683.g ID=Lus10031683.BGIv1.0 annot-version=v1.0 MPSITPANNSAESVDKKVKKMKKTALDWLESETGTPKSKKKKRSKVSDQEEEEPKSEKKAKKDKKKKRKAEEIENGDDDKSRTSSELGDEAEKEKKKSKK VKKAKEEEVEEEAKAVDPNAVTNFRISEPLRQKLKSRGIEALFPIQAMTFNDVLDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKAARKMGYGRPPSV LVLLPTRELASQLGFEIFFQVHEDFKVYGESLGLTSCCLYGGAPYNPQESVLKRGMDIVVGTPGRIKDHIERGNINFSCLVFRVLDEADEMLRMGFVEDV ELILGKVADVTKVQTLLFSATLPSWVKQISSRFLKQSKKTIDLVGNEKMKASINVRHIVLPCTPSAIPQLIPDVIHCYSSGGRTIIFTEKKETANQLAGL LPGAHPLHGDIQQSQREVTLSGFKSGKFMTLVATNCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRRSNISKIERESGVKFEHVAAPQAADIAQSVGI QAAESINKVSDSVIPAFKSAAEDMLSSSGLSAVDLLAKALANASGYTEIKTRSILTSMENHVTLLLDAGKPFYSHSYAYSIMKKFLPEDKVESVKGITLT ADGKGAVFDVASVDVDTFLAGARKVGYESIEVVKTLPALQERDQSRGRFGGGGGRGYGGDRNSGGGYRFGRGGSSGFGGCGGRGGSGGWRGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	0	1
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	11.5	0.6945
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	14.4	0.7005
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	14.6	0.7184
AT2G37960			unknown protein		Lus10027749 [exp]	15.0	0.6861
AT4G08630			unknown protein		Lus10001720 [exp]	16.3	0.7192
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	24.9	0.6885
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	31.3	0.6418
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	35.3	0.6242
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	36.2	0.6788
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	41.8	0.6739

Compare expression of checked genes

Lus10031683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.