Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62200 219 / 2e-73 Embryo-specific protein 3, (ATS3) (.1) AT2G41475 176 / 3e-56 Embryo-specific protein 3, (ATS3) (.1) AT5G62210 134 / 2e-39 Embryo-specific protein 3, (ATS3) (.1) AT5G07190 116 / 1e-32 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027387 [exp] 339 / 1e-120 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10019416 [exp] 155 / 3e-48 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1) Lus10009020 [exp] 39 / 0.0009 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10043273 [exp] 0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132700 [exp] 236 / 3e-80 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.001G193500 [exp] 188 / 2e-61 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1) Potri.006G069800 [exp] 184 / 2e-59 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 182 / 3e-59 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130800 [exp] 169 / 3e-54 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132900 [exp] 160 / 6e-50 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130900 [exp] 156 / 2e-48 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.010G214400 [exp] 97 / 3e-25 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF06232 [flax] [poplar] ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence Show only first row Show all	>Lus10031684 pacid=23180689 polypeptide=Lus10031684 locus=Lus10031684.g ID=Lus10031684.BGIv1.0 annot-version=v1.0 ATGGCCACGGCTCCGTCTTCTTGTTTGCTTATCATCTCCGTCTTCGTCCTCTCCGTCTCCTTCTGTTCGGTGGCTGATTCCGTCCCAACACTCCAGCCTC ACGCTCTCGACTCCTTCAACCTCAGCTTGATTCAGGAGGTAGCGAATAGCTGTTCTTACACGGTGGACATAAGCACCAGCTGCTCGTCCTCTGTGTACAC TCGTGATCAAATCAGTATCGCCTTCGGAGACGCCTATGGAAACCAGATTTACGCGCCAAGGATCGACGATCCAGCCACGAGGACATTCGAGCGATGCTCC TCCGACACATTCCAGATAAACGGGCCTTGTGCATACCAGATATGCTACATGTACCTCTACAGGAGCGGACCCGACGGCTGGAAGCCAGGGAGCGTGAGGA TCTACGGCTACAATTCTCGGGCTGCCACGTTCAACTACAACACTTTCATCCCTGGCGATCTCTGGTACGGGTTCAACTACTGCGGCAATGCTGGCTCTGG GAGTAGCAAGCGGGTTCCCGGATGGTTCGTCTCTGTGATTCTCTGTGTTCTTGCTAGCGCTATGCTGTGA
AA sequence Show only first row Show all	>Lus10031684 pacid=23180689 polypeptide=Lus10031684 locus=Lus10031684.g ID=Lus10031684.BGIv1.0 annot-version=v1.0 MATAPSSCLLIISVFVLSVSFCSVADSVPTLQPHALDSFNLSLIQEVANSCSYTVDISTSCSSSVYTRDQISIAFGDAYGNQIYAPRIDDPATRTFERCS SDTFQINGPCAYQICYMYLYRSGPDGWKPGSVRIYGYNSRAATFNYNTFIPGDLWYGFNYCGNAGSGSSKRVPGWFVSVILCVLASAML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	0	1
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	1.0	0.8620
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	2.8	0.8517
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	4.2	0.8236
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	4.5	0.8273
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	5.5	0.8362
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	6.9	0.8302
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	7.7	0.7998
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	10.2	0.7886
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	11.5	0.8224
AT2G02510			NADH dehydrogenase (ubiquinone...		Lus10005182 [exp]	11.8	0.7660

Compare expression of checked genes

Lus10031684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.