Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62220 597 / 0 ATGT18 glycosyltransferase 18 (.1) AT2G29040 335 / 5e-107 Exostosin family protein (.1) AT2G20370 328 / 3e-105 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT1G63450 325 / 1e-103 RHS8 root hair specific 8 (.1) AT4G13990 317 / 3e-102 Exostosin family protein (.1) AT5G41250 318 / 5e-102 Exostosin family protein (.1) AT2G32750 304 / 1e-97 Exostosin family protein (.1) AT1G68470 298 / 7e-96 Exostosin family protein (.1) AT2G31990 288 / 8e-92 Exostosin family protein (.1) AT2G32740 277 / 1e-87 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027386 [exp] 904 / 0 AT5G62220 621 / 0.0 glycosyltransferase 18 (.1) Lus10015022 [exp] 686 / 0 AT5G62220 624 / 0.0 glycosyltransferase 18 (.1) Lus10016532 [exp] 343 / 4e-112 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 342 / 8e-111 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 341 / 2e-110 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 323 / 1e-103 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 322 / 4e-103 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 318 / 2e-102 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10000604 [exp] 314 / 2e-100 AT1G63450 625 / 0.0 root hair specific 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130700 [exp] 644 / 0 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 641 / 0 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.009G032500 [exp] 332 / 2e-106 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 324 / 2e-104 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 324 / 6e-104 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G321000 [exp] 317 / 3e-102 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 313 / 5e-100 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G382200 [exp] 292 / 5e-93 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 291 / 9e-93 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 252 / 6e-78 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10031685 pacid=23180615 polypeptide=Lus10031685 locus=Lus10031685.g ID=Lus10031685.BGIv1.0 annot-version=v1.0 ATGCTCCCAATCGCCGATCCCCCGCCGCCTGAGCCCGCCGACGTCCGCAAAAAGCCCAAATTCGACGATAAAATCGGCCGGAAAAACTCCTTCAGCTCCC TCACCTCCCTCCTCAAACACGCCCACTTATCCCATCCTCGTTCATGGCTCCTCATCTCCGTCCTCTTCATCCAGATCCTCCTCCTCCTCACTCTCCGCTC CGTTCCTTTCCCTTTCACTTTCCTCCGCCATGTTGATTCTGATTCTTCCCCTTCCAGTTCCATTTCCAGTTCATCTTCCCCCCTTCCTGCTGCTGTTGTC TCTGCGCCACTCGTCAATTCAATCTCTGCCGCCTCCGCAACCACCGCCGCCGCCGCGGATTGTAAAAACGGGTACGTTTACGTATACGATCTCCCGAGTA ATTTGAACTACGATCTAATTCACAACTGCGAGAAACTCAACCCGTGGAGCTCCCGGTGTGATGCGCTGGCGAACGACGGATTCGGCCAGCAAGCCAGTAC CGGAGTTTCTGGGATCGTGCCGGAAGAGTTGGCTCCGGCGTGGTACTGGACGGATCAGTTCGTCTCGGAGATCGTGTACCATAACAGGATGATGAAACAC AAATGCAGAACTTTGAATCCAAGCAATGCGACGGCGTTTTATATCCCGTTTTACGCCGGATTGGCAGTGGGGAGATTCCTCTGGCAGAATTTCAGCCCCC AGGATCGCGACCTTCACTGCGAGCAGATGCTGAAATGGATCCAAGATCAGGAGTATTTCAAAAGATCCGACGGCTGGGATCACTTCCTTACCATGGGACG GATCACATGGGATTTCCGCCGCTCCGAGCAGAACGACTGGGGTTCGAGGTGCATTTACTTGCCGGGGATGAGAAACATCACTCGGTTGTTGATCGAGAGG AATCCGTGGGACTATTTCGACGTCGGTGTACCTTACCCTACAGGATTCCACCCCAGGTCCGACTCCGACGTCGTTTCGTGGCAGGAGTACGTCCGCAGCC GCAACCGCTCGACCCTCTTCTCCTTCGCCGGAGCTTCGCGGAAATCGTTCAAGAACGATTTCCGTGAGATCCTCATAAACCACTGCATCAACGAATCGGA CGCGTGCCGCGTCGTCAACTGCGGCGGATCGAAATGCGCCAACGGATCCGCCGCCATCCTCCAGACGTTTCTCGACTCCGATTTCTGTCTACAGCCGAGA GGGGACAGCTTCACGCGCCGCTCGATTTTCGATTGCATGGTCGCCGGTTCGATCCCGGTGGTTTTCTGGCGGAGGACGGCGTATTACCAGTACGAGTGGT TCCTCCCCGGAGAACCGGGTAGCTACTCTGTTTTCATTCACAGGAACGACGTGAAGAACGGGACGTCGATTCGGAAAGTGCTGGATGGGTACAGTAGAGA GGAGGTGAGGAAGATGAGGGAGAAGGTGATCGAGTACATTCCGAAGCTTGTTTATGCTAGGTCGAGCGATGGGTTGGAGACGATTAAAGATGCGTTCGAC GTCGCCATTGATGGAGTGTTGAGGAGGTTCGAAGAGCAGAAGGAGTTCGGGTATAAGTGGTAA
AA sequence Show only first row Show all	>Lus10031685 pacid=23180615 polypeptide=Lus10031685 locus=Lus10031685.g ID=Lus10031685.BGIv1.0 annot-version=v1.0 MLPIADPPPPEPADVRKKPKFDDKIGRKNSFSSLTSLLKHAHLSHPRSWLLISVLFIQILLLLTLRSVPFPFTFLRHVDSDSSPSSSISSSSSPLPAAVV SAPLVNSISAASATTAAAADCKNGYVYVYDLPSNLNYDLIHNCEKLNPWSSRCDALANDGFGQQASTGVSGIVPEELAPAWYWTDQFVSEIVYHNRMMKH KCRTLNPSNATAFYIPFYAGLAVGRFLWQNFSPQDRDLHCEQMLKWIQDQEYFKRSDGWDHFLTMGRITWDFRRSEQNDWGSRCIYLPGMRNITRLLIER NPWDYFDVGVPYPTGFHPRSDSDVVSWQEYVRSRNRSTLFSFAGASRKSFKNDFREILINHCINESDACRVVNCGGSKCANGSAAILQTFLDSDFCLQPR GDSFTRRSIFDCMVAGSIPVVFWRRTAYYQYEWFLPGEPGSYSVFIHRNDVKNGTSIRKVLDGYSREEVRKMREKVIEYIPKLVYARSSDGLETIKDAFD VAIDGVLRRFEEQKEFGYKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	0	1
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	1.4	0.8830
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	1.7	0.8632
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	2.4	0.8654
AT4G39840			unknown protein		Lus10024058 [exp]	3.9	0.8500
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	5.3	0.8587
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	9.4	0.7721
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	11.8	0.7971
					Lus10024338 [exp]	12.1	0.7965
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	13.4	0.8241
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	14.0	0.7859

Compare expression of checked genes

Lus10031685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.