Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51710 708 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 556 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 551 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT4G00630 104 / 4e-23 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT4G04850 102 / 2e-22 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT1G01790 96 / 3e-20 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G23700 45 / 0.0002 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031106 [exp] 852 / 0 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10040549 [exp] 539 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 519 / 6e-179 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10007999 [exp] 344 / 1e-113 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008000 [exp] 106 / 5e-26 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10007104 [exp] 106 / 8e-24 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 94 / 4e-20 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 91 / 1e-18 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 91 / 1e-18 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130500 [exp] 736 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 723 / 0 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 576 / 0 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 570 / 0 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.009G080800 [exp] 100 / 4e-22 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.014G080800 [exp] 97 / 1e-20 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 94 / 1e-19 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10031687 pacid=23180738 polypeptide=Lus10031687 locus=Lus10031687.g ID=Lus10031687.BGIv1.0 annot-version=v1.0 ATGATCTCCCGGAAGCCAGCATTGTGCGGGTTCTGGTGTTGCTGCCTGCTGTTGATGCTGCTGGCGAGGATTTCCGACTCCGTTAGATCTGACAAGGAGA TGAGGGAGAGGTTCTACGGGAATCTGTTGAATTCCACTCCTCCAGCAAGCGGAGAAGGGAGTATTGCCAAGATGTTCGATCGCGTCCTCGAGAAGGAGTT CTCAGATAACGATCAGCCTGAAGAATGTGAAACCAGCTGTTTCTTCAAGCAGCTGCTGAAGCTTCCAGTCGAAGACTGTGATGCCTGTTTGGTGTTCTCT TGTTCTGATGCAAACAGCTTTAACAACAGTGTGGCGGACCAACAAGCTGTTCTGGAAACTGTAGCTAAAGTTACACATGAGAAGGGCAAGAAAAATGACA CACAGTCGGGGAATGGAACAAGATCATTTCAGTTCCAAGATGTATTTTCGCTAGAGAATGAAGATTCTGAGGATGGCACAACCCTCATTGACAAAAAGGA TAACGTTTTCGTCATGTCAAACAAGAAATCTAAATATCCTGTGCTGCAAGTAGATGTGAGGTTAATTTCAGATCTTGTGGTTGTCATAGTTTCTGCTGCC ATTGGTGGAATTATCTTCTCTTGCTTGGGGCAGCCGGTGATTGTTGGTTATCTTCTTGCTGGGTCAATCGTTGGACCCGGAGGTCTTAAATTCATAAGTG AGATGGTACAGGTTGAAACTTTTGCACAGTTTGGTGTCATCTTTCTTCTTTTTGCTTTGGGCCTTGAGTTCTCTATAACAAAGTTAAGAGTGGTGGGTGC TGTTGCTGTGTTTGGAGGTTTTCTTCAAATTGCGATGTTTATGTTCTTGTGCGGCTTAACTGCTATGTTGTGTGGAGCAAAGTTGTCCGAGGGTGTTTTT GTTGGCTCCTTCTTGTCAATGTCATCAACAGCAGTGGTGGTGAAGTTTTTAGCTGAGCGTAACAGCACTGGTTTACTTCACGGTCAAGTTACAGTGGGAA CACTTATTTTTCAGGATTGTGCTGTTGGCTTGTTGTTTGCTTTACTCCCAGTTTTGGGTGGCAGTAGTGGGTTACTACATGGAATGATTTCAATGGGAAA ATTGTACGTGACAAATGAACTATATCAGCTTGCTGCTGTGGCTTTCTGCTTGCTATCAGCTTGGTGCAGTGACAAACTAGGTCTCAGTCTCGAGTTGGGT TCATTTGTCGCCGGAGTTATGATATCTACAACCGATTTTGCACAACATACTTTAGACCAGGTGGAGCCGATTCGCAATCTGTTTGCAGCCCTGTTTCTTG CAAGTATTGGAATGCTTATACACGTGCAGTTTCTCTGGACCCACGTTGATATACTTTTGGCATCAGTGATTCTCGTTATAGTTGTGAAGACAACTGTTGC GGTTGTTGTTATTAAATCCTTCGGTTATGGCATCCGGACATCATTTCATGTTGGTGTGCTGCTTGCTCAAATCGGGGAGTTTGCATTCGTTCTGCTTAGT CGTGCCTCAAATCTTAACCTTGTTGAGGGGAAAATGTACCTTCTTCTTATTGGAACAACAGCTCTAAGTCTGGTTACCACTCCTCTCCTGTTCAAATTGA TACCTAACGTCATGAATCTCGGAGTCCTTCTCCAATGGTTTCCATCAGAAGGCGGCTCAGCGACCGAGGACAAGGTTGCGGCCATCGAGCGTAACAGACT GCTATGA
AA sequence Show only first row Show all	>Lus10031687 pacid=23180738 polypeptide=Lus10031687 locus=Lus10031687.g ID=Lus10031687.BGIv1.0 annot-version=v1.0 MISRKPALCGFWCCCLLLMLLARISDSVRSDKEMRERFYGNLLNSTPPASGEGSIAKMFDRVLEKEFSDNDQPEECETSCFFKQLLKLPVEDCDACLVFS CSDANSFNNSVADQQAVLETVAKVTHEKGKKNDTQSGNGTRSFQFQDVFSLENEDSEDGTTLIDKKDNVFVMSNKKSKYPVLQVDVRLISDLVVVIVSAA IGGIIFSCLGQPVIVGYLLAGSIVGPGGLKFISEMVQVETFAQFGVIFLLFALGLEFSITKLRVVGAVAVFGGFLQIAMFMFLCGLTAMLCGAKLSEGVF VGSFLSMSSTAVVVKFLAERNSTGLLHGQVTVGTLIFQDCAVGLLFALLPVLGGSSGLLHGMISMGKLYVTNELYQLAAVAFCLLSAWCSDKLGLSLELG SFVAGVMISTTDFAQHTLDQVEPIRNLFAALFLASIGMLIHVQFLWTHVDILLASVILVIVVKTTVAVVVIKSFGYGIRTSFHVGVLLAQIGEFAFVLLS RASNLNLVEGKMYLLLIGTTALSLVTTPLLFKLIPNVMNLGVLLQWFPSEGGSATEDKVAAIERNRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	0	1
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	4.0	0.8133
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	4.2	0.8638
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	8.9	0.7999
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	18.5	0.8316
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	21.6	0.8279
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	23.6	0.8107
AT5G28910			unknown protein		Lus10008196 [exp]	25.5	0.7189
AT4G12840			Protein of unknown function (D...		Lus10036434 [exp]	32.7	0.7299
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10003569 [exp]	36.5	0.7578
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	37.7	0.7888

Compare expression of checked genes

Lus10031687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.