Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51700 271 / 4e-93 ATRAR1, RPR2, PBS2 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031107 [exp] 375 / 2e-134 AT5G51700 288 / 1e-99 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132300 [exp] 296 / 3e-103 AT5G51700 290 / 3e-100 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04968 [flax] [poplar] CHORD CHORD
Representative CDS sequence Show only first row Show all	>Lus10031688 pacid=23180656 polypeptide=Lus10031688 locus=Lus10031688.g ID=Lus10031688.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGGCAGACTGCGGTGCCAGAGGAATGGCTGCAACGCCAAGTTCACGGAGGACGACAATCCTGAAGGTTCTTGTCAGTATCACGAATCGC CCAAATTCCATGATGGAATGAAAGAATGGAGTTGTTGCAAAAAGAAAAGCCACGATTTCAGCCTATTTATGGAAATACCAGGTTGCAAGACAGGGAAGCA CACTACTGAGAAGCCAGCATTGCCAAAGGTGACTGCAACTCCCAAAGCACCAGTCTCTAAACCCTCTGTGCCTTCTACGACTAATGCACCCTCGAGAGAA GCTTGTCCTGGATGCAAGCAGGGTTTCTTTTGCTCTGATCACGGTTCACAAACTACATCAGCTGCACCTGCTAAAAGCTATGCAGAGATTCCAGCACCAG CTCCGGTGAAGAAGAGAATCGACATAAACGAGCCCCAAACCTGCAAGAACAAAAGCTGTGGCAAAACATTCAAAGAAAGAGACAACCACGACACGGCATG CAGCTACCATCCAGGGCCTGCTGTCTTCCACGACAGGAACAAATTGTGGCAGTGTTGCGATGTCCACGTGAAGGAGTTCGACGAATTCATGGACATTCCT CCGTGCTCGAAAGGATGGCACAATGCCGATCCAAGTTCTTGA
AA sequence Show only first row Show all	>Lus10031688 pacid=23180656 polypeptide=Lus10031688 locus=Lus10031688.g ID=Lus10031688.BGIv1.0 annot-version=v1.0 MADDGRLRCQRNGCNAKFTEDDNPEGSCQYHESPKFHDGMKEWSCCKKKSHDFSLFMEIPGCKTGKHTTEKPALPKVTATPKAPVSKPSVPSTTNAPSRE ACPGCKQGFFCSDHGSQTTSAAPAKSYAEIPAPAPVKKRIDINEPQTCKNKSCGKTFKERDNHDTACSYHPGPAVFHDRNKLWQCCDVHVKEFDEFMDIP PCSKGWHNADPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	0	1
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10042621 [exp]	9.8	0.8472
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	11.8	0.8647
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	18.2	0.8441
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	19.8	0.7994
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	21.8	0.8503
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	21.8	0.8500
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	22.2	0.8353
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10016508 [exp]	30.4	0.8298
AT3G59390			unknown protein		Lus10040180 [exp]	31.3	0.7449
AT5G65490			unknown protein		Lus10002654 [exp]	34.5	0.8084

Compare expression of checked genes

Lus10031688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.