Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07170 102 / 4e-24 Cell cycle regulated microtubule associated protein (.1) AT4G11990 94 / 8e-21 Cell cycle regulated microtubule associated protein (.1) AT4G22860 91 / 1e-19 Cell cycle regulated microtubule associated protein (.1.2) AT5G62240 73 / 5e-14 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031109 [exp] 518 / 0 AT5G07170 124 / 6e-31 Cell cycle regulated microtubule associated protein (.1) Lus10006677 [exp] 63 / 1e-10 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10007022 [exp] 62 / 2e-10 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10033674 [exp] 50 / 3e-06 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 49 / 4e-06 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10018608 [exp] 49 / 6e-06 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 48 / 1e-05 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130300 [exp] 142 / 2e-38 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.003G117800 [exp] 111 / 1e-26 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 105 / 7e-25 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.007G138600 [exp] 56 / 3e-08 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 56 / 4e-08 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10031690 pacid=23180696 polypeptide=Lus10031690 locus=Lus10031690.g ID=Lus10031690.BGIv1.0 annot-version=v1.0 ATGGACGAGTTTGAGGATAGGGAGGCGGATGAGTTTTATTGCGATCCGCTTTCAGGCTTCGTGGAGGAGTTCGACCTCGATTACGAGTTCGACGCGCCTA AGTTCCATGACTTCATCAGGCGTGAAAATGATTCGGAGGCCGAGGAAGCTGAGCGTTGGCTGGATGTTGCTTCCGGATATCAGCCTTCTCCTCTTAAGAG GTATTGGAGACCTTTGATTGGTGCAGAATCGAATCATTCCAGTTCCACCGCGGCGAATTCTTCCGTTGAAGATGATGATAATGAGACAGGATCAGGATCA AGCAACTGTAAATGTGAAGTGGGATCGAAACCGAAGGAGAAATCTAGAATTATGCAAAAAAGTTTGAGTTTCATGAGTCCAACAGCGAGTCACTTGGCGA AGAAACAGGCAGCTGAAAAGATTCGATGCGAGCGACTACTCGGAAGGTTTCCGAAAGATGCCAAGAGCAAAGGGAAGAGTTCGAGGAGTTCGTCAACAAG TGGAGTTTCAGCAACCAAACGGCAAAAACTTGAGGCTGGTTACTTGCGCAAGGCTGCTCGGCTGAAACATCAAACTCGGTTCCCACACAAGGAATCTGTT AAGGTCAGCTCTAAAGCAGCATCAGGTAGGTTTAAAGCTACAGTTCCTATACAGCCAAATCTAGCAACAGCAAGTAGAGCTGAAAGGCACAGATCCAGAA CGAAATCTGAATTGGAAAATATTGGACAGCCCATCACTGCAGAAACAAGACCATTGAACAAAAAGATCCAGAAGGTTCCTTCGTTGCCTATACCAAGAAA GGCCACCAGACAGCTACTAGAGCTTCAAGGAGCAAAGCTACACCGTTCGAAATCATCGTCTGAAAAAGAAAACAGGAATTTGACAAGCTTGAATGTGGGT CTTCCTGTTAGGGATAGACGGGAACTTCGTGAGAAGAGTAAATCTTTCAACATCAAGGGACATAAGGGTTCAACCGAAAGGCGAGTCATGGATGAGCCGC CAGTGGATGCATTTAGTCAGGTTCGCTACCGTCAGGTTCTTGCAAAACCACTCTCTCTAGCGTCAAAACTCCATTCAGCCGTTCATCTTCAGGCAAAGGT TGCTACAAAGGAGAATGCACGGAGGGATCCGAAACGAGACAAAGAGGTACACCACTAG
AA sequence Show only first row Show all	>Lus10031690 pacid=23180696 polypeptide=Lus10031690 locus=Lus10031690.g ID=Lus10031690.BGIv1.0 annot-version=v1.0 MDEFEDREADEFYCDPLSGFVEEFDLDYEFDAPKFHDFIRRENDSEAEEAERWLDVASGYQPSPLKRYWRPLIGAESNHSSSTAANSSVEDDDNETGSGS SNCKCEVGSKPKEKSRIMQKSLSFMSPTASHLAKKQAAEKIRCERLLGRFPKDAKSKGKSSRSSSTSGVSATKRQKLEAGYLRKAARLKHQTRFPHKESV KVSSKAASGRFKATVPIQPNLATASRAERHRSRTKSELENIGQPITAETRPLNKKIQKVPSLPIPRKATRQLLELQGAKLHRSKSSSEKENRNLTSLNVG LPVRDRRELREKSKSFNIKGHKGSTERRVMDEPPVDAFSQVRYRQVLAKPLSLASKLHSAVHLQAKVATKENARRDPKRDKEVHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22860			Cell cycle regulated microtubu...		Lus10031690 [exp]	0	1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024819 [exp]	2.2	0.9275
					Lus10036646 [exp]	14.4	0.9382
					Lus10013528 [exp]	20.7	0.9346
					Lus10036535 [exp]	21.8	0.9346
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	30.0	0.9325
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	30.2	0.8600
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	33.3	0.9246
AT4G13450			Adenine nucleotide alpha hydro...		Lus10032598 [exp]	35.7	0.8428
					Lus10018648 [exp]	36.0	0.8672
					Lus10010593 [exp]	37.6	0.9266

Compare expression of checked genes

Lus10031690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.