Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51670 377 / 6e-127 Protein of unknown function (DUF668) (.1) AT5G04550 157 / 6e-42 Protein of unknown function (DUF668) (.1) AT3G23160 135 / 2e-34 Protein of unknown function (DUF668) (.1) AT1G34320 71 / 1e-12 Protein of unknown function (DUF668) (.1) AT5G08660 56 / 6e-08 Protein of unknown function (DUF668) (.1) AT1G30755 55 / 1e-07 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031110 [exp] 799 / 0 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 134 / 1e-33 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 130 / 8e-33 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 129 / 4e-32 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 128 / 9e-32 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 128 / 1e-31 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 121 / 3e-29 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 70 / 2e-12 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 69 / 3e-12 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129900 [exp] 527 / 0 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 520 / 0 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 151 / 1e-39 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 149 / 6e-39 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 131 / 9e-33 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 129 / 5e-32 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 127 / 2e-31 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 67 / 1e-11 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 67 / 1e-11 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 66 / 4e-11 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10031691 pacid=23180624 polypeptide=Lus10031691 locus=Lus10031691.g ID=Lus10031691.BGIv1.0 annot-version=v1.0 ATGGCGCCGCTAGAAACATGGCTAATCAAAGCAGTCAAATCCGCAATCAACCTCCCACGATCAGCCTCCACCAAACCTTCCAAAACCGTCGGCATCCTCT CCTTCGAGATAGCCTCCTTAATGACCAAGCTCATCCACCTCTGGCAATCCCTCTCCGACAAGAACGTTATCCGTCTCAAGAACGACTCCATCTCCTTACA AGGAGTCCGCAAGATCGTCTCCAACGACGAGTCCTTTCTCCTCGGACTCGCCTGCGCCGAACTCACCGAAAACATCCGCCTCGTCGCGAAATCCGTCTCC CGAGTCGCCGCCGCGCGCTGCTCGGATTCGAACCACCGTCAGTTTAACCGGTGGTTCGACCGGTTCGCCGACTCCGGCCACGACCCCAACGGGTGGGTGG TCAGCTGGAAGGAGATGGAAGGGACAGTGAATCGGAAGATGGACCGTTACGTGACATCGACTGCTGCTTTGAGAAAGGAGATCGAGGAGCTGACCGCGGT CGAGACGGCGCTAAGGAAGGCCGTTAGTAATTGTGGAGACGAAACGACGTCGTTGAAGGAGCAGAAGATTGCTGATCTCCGGCAGAAGGTGTTCTGGCAG AGGCAGGAGGTTAAGTCGTTAAAGGAGAAGTCTCTTTGGAATCGGAGCTTCGACGGCGTCGTTTCGATTTTGGCTAGATCTACTTTTACTGTGTTGGCGA GGGTAAAATTGGTTTTCGGGTTAGGACAGGGATTTCCTACTTATTTACCGAGGAGCCTCTCCGCTTCCGCCGCCGTGTACCCGTCCGGAAACCCGACTGA CAACCCGACTGACAACCAAACCCAAACCCACTTCGTATCCGGTCAGTTAACGAAGAGTATGAAGAAGGATAACGACAACAGCGACGACAAGAAATCGAAA TTGTCGTTCTTCGAGACGAACTCGGAGATGCTGAAACCGCCGGCGACGACGCTCGGGGCAGCGGCGTTGGCCTTACACTACGCGAATCTGATCATCGTGA TGGAGAAGATGATCAAGTCGCCGCAGTTGGTGGGGATCGACGCACGGGACGACCTCTACGCGATGCTGCCGAGCAGCGTGAGGTCCGCGCTCCGGCGGAG GCTGAGAGGGGTCGGGTTCACGGCGACGGATCCGGGTTTAGCCGGCGAGTGGAAGGACGCGCTAGGAAGGGTGCTGAGCTGGCTGTCGCCGCTGGCGCAC AACATGATCAAGTGGCAGAGTGAACGGAGCTTCGAGCAGCAAAATTCCTCGTCGTCGCCGAAGTCGACAGCGCACGTGATGCTTCTACAAACGCTGTACT TCGCCAACAAGGAGAAGGCGGAGGCAGCGATCACTGAGCTTCTTGTGGGGCTGAATTACATCTGGCGGTTCGAGAGGGAGATGACGGCGAAGGCTCTGTT CGAGTGCGGCGGCGGGTTGATGGTGAAGAGCTCCGGTAAAGATGGATGTTGA
AA sequence Show only first row Show all	>Lus10031691 pacid=23180624 polypeptide=Lus10031691 locus=Lus10031691.g ID=Lus10031691.BGIv1.0 annot-version=v1.0 MAPLETWLIKAVKSAINLPRSASTKPSKTVGILSFEIASLMTKLIHLWQSLSDKNVIRLKNDSISLQGVRKIVSNDESFLLGLACAELTENIRLVAKSVS RVAAARCSDSNHRQFNRWFDRFADSGHDPNGWVVSWKEMEGTVNRKMDRYVTSTAALRKEIEELTAVETALRKAVSNCGDETTSLKEQKIADLRQKVFWQ RQEVKSLKEKSLWNRSFDGVVSILARSTFTVLARVKLVFGLGQGFPTYLPRSLSASAAVYPSGNPTDNPTDNQTQTHFVSGQLTKSMKKDNDNSDDKKSK LSFFETNSEMLKPPATTLGAAALALHYANLIIVMEKMIKSPQLVGIDARDDLYAMLPSSVRSALRRRLRGVGFTATDPGLAGEWKDALGRVLSWLSPLAH NMIKWQSERSFEQQNSSSSPKSTAHVMLLQTLYFANKEKAEAAITELLVGLNYIWRFEREMTAKALFECGGGLMVKSSGKDGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	0	1
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	1.0	0.9219
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	4.5	0.8169
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	4.5	0.8604
AT3G11760			unknown protein		Lus10016183 [exp]	6.5	0.7593
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	12.7	0.8201
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	16.2	0.7969
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	18.5	0.7736
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	21.1	0.8168
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	21.3	0.8104
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015669 [exp]	29.3	0.7731

Compare expression of checked genes

Lus10031691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.