Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12060 182 / 9e-58 Double Clp-N motif protein (.1) AT4G25370 166 / 2e-51 Double Clp-N motif protein (.1) AT5G50920 61 / 2e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 56 / 8e-09 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT3G45450 49 / 1e-06 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031116 [exp] 379 / 3e-135 AT4G12060 176 / 4e-55 Double Clp-N motif protein (.1) Lus10006663 [exp] 150 / 4e-45 AT4G12060 179 / 5e-56 Double Clp-N motif protein (.1) Lus10007005 [exp] 144 / 7e-43 AT4G12060 181 / 5e-57 Double Clp-N motif protein (.1) Lus10036017 [exp] 60 / 3e-10 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 60 / 3e-10 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032543 [exp] 59 / 3e-10 AT5G50920 265 / 9e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043198 [exp] 58 / 3e-10 AT5G50920 266 / 3e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131700 [exp] 224 / 2e-74 AT4G25370 243 / 1e-81 Double Clp-N motif protein (.1) Potri.012G129800 [exp] 217 / 2e-71 AT4G25370 248 / 2e-83 Double Clp-N motif protein (.1) Potri.001G115500 [exp] 161 / 3e-49 AT4G12060 226 / 2e-74 Double Clp-N motif protein (.1) Potri.015G105100 [exp] 62 / 6e-11 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 62 / 6e-11 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10031694 pacid=23180601 polypeptide=Lus10031694 locus=Lus10031694.g ID=Lus10031694.BGIv1.0 annot-version=v1.0 ATGGCTAGCTCCACCCTTTCATCTCTCCCGATTTCATCATCTCTCTCTCGTTCCTCGTCCGAACACAACCTCCTCGGACCCACTACTTCTTCGCTTTCTC CGTTCAACGGAAACAAGCTGCCGATCCCTCGACTCAGTTTGACCAACGTCGTTCTCAAATGCCGTCACCCGAGGGTAGCCACAGTTTCAGCCACTCTCCC GACGAAGGAGTACACTGATCGGGCGAAAATCCCCAAATGGTCATCTAGAGCTATTAGGTCGTATGGACTGGCGGAATTGGAAGCTAGGAAGCTCAAATAT GCTGAGACGGGAACCGAATGCCTCCTAATGGGGATTTTGATTGAAGGAACCAGTGCAGCTGCAAAGTTCTTAAGAGCTAACGGTGTCACCACCTACAAGA TCCGCGACGAAATTGTGAACTTGCTTGGGAAACGCTATTTCTTAACCTTATCTCCCGAGTTTCCTCCACCAACAGAACAGGCCCTAAGAGCCCTTGATAA GGCCATTGAAGAGACATTAAAGTCAGGGAATGAGGGAGAAGTCACTCCATCGCATGTACTCCTAGGCATTTGGTCAGACCCTGAATCAGTTGCTCGCGAG CTCCTAAAGACACTCGGTTTTACGGATGGGAAAATGAAAGAGCTCACTGTCAACCATGTAAGTTTCTAG
AA sequence Show only first row Show all	>Lus10031694 pacid=23180601 polypeptide=Lus10031694 locus=Lus10031694.g ID=Lus10031694.BGIv1.0 annot-version=v1.0 MASSTLSSLPISSSLSRSSSEHNLLGPTTSSLSPFNGNKLPIPRLSLTNVVLKCRHPRVATVSATLPTKEYTDRAKIPKWSSRAIRSYGLAELEARKLKY AETGTECLLMGILIEGTSAAAKFLRANGVTTYKIRDEIVNLLGKRYFLTLSPEFPPPTEQALRALDKAIEETLKSGNEGEVTPSHVLLGIWSDPESVARE LLKTLGFTDGKMKELTVNHVSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	0	1
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	1.0	0.9208
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	1.4	0.9176
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	1.7	0.8964
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	2.8	0.8640
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	3.0	0.8598
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	4.5	0.8582
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	5.5	0.8829
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10013343 [exp]	6.0	0.8458
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	7.4	0.8573
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	7.5	0.8304

Compare expression of checked genes

Lus10031694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.