Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 166 / 6e-48 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT5G62260 162 / 5e-46 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 160 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 155 / 4e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 152 / 4e-43 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 146 / 5e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 125 / 1e-32 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63470 112 / 6e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 111 / 5e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 109 / 1e-26 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031118 [exp] 286 / 7e-96 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 190 / 2e-57 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 187 / 3e-56 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 164 / 4e-47 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 164 / 4e-47 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 159 / 2e-45 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030381 [exp] 136 / 7e-37 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 133 / 2e-35 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10000315 [exp] 127 / 3e-33 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129500 [exp] 210 / 5e-65 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 181 / 3e-54 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 179 / 1e-53 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 179 / 3e-53 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 176 / 3e-52 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 142 / 3e-39 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 135 / 1e-36 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 134 / 6e-36 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.005G256500 [exp] 133 / 3e-35 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.003G090900 [exp] 132 / 3e-35 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10031696 pacid=23180612 polypeptide=Lus10031696 locus=Lus10031696.g ID=Lus10031696.BGIv1.0 annot-version=v1.0 ATGGAGTCAACACAAGCAACGATTTCTTCAGCCGTTAGGGGAAATGAAGCCCAGAACCCGATTCCGAATACCATCCACTTCGGCAGCCCACCGGTGACGT CTCCACCCGCGCCGGCGGTGGCGGCGAGCGGCGGAACGGATGGGAAGAAGAAAAGAGGTAGGCCGAGGAAGTACGGACCAGACGGGAGATTGACGGCGAC GGCATTGTCGCCGACTCCAATATCGGCGTCCATTCCGATCTCCTCCTCCTCGTCGCCGGCGGCGCCTTGGAAAAGGGGAAGCAGAGGGAGAGGTTTACAC TCGGTGAAGAAGCAGCAAAGAACCACCGAGTATGAAACCCCAGGAGCTTTTGCAGGAAATGGAGTAGCTTACTCGGTAGGAGCGAATTTCACGCCCCATG TAATCACGGTGAATGCTGGCGAGGATGTTATGATGAAAGTCATGTCCTTTTCGCAGCAAAGCGCGCGAGCCGTATGCATTCTCTCTGCGAATGGGACGAT CTCGAATGTCACGCTCCGCCGGCCTACTTCCTCTGGCGGTACACTGACATACGAGGGCCGATTCGAGATACTTTCGCTGTCGGGATCGCTGATGCCAACA GACAGCGGAGGGACGAAGATCAGATCAGGCGGGATGAGTGTTTCGTTGGCTGGTCCTGATGGTCGTGTTGTCGGGGGTGGCCTTGCCGGTCTTTTGATTG CTGCTGGTCCTGTCCAGGTAGTTGTTGGCAGTTTTCTACCTGGTCACCAGATGGAGCAACAAACCAAGCAGAAGAAGCAGCGATTCGAGCAGCAGCCACC AATCTCCGTCGCTCCAGCACCTCCTCCTCCTGTAACCGTCGTATCTGGTCAAGAACTCAAGGAGAGTTACGCTACAGCACCACCACCAAAGCCTGCAGTG GTCCCCTTGTCATCTTTGTTTCCCGAAGAAAGCAATCCTCCACCTCCTCCTCCGTCATTTAACAACCCTATTCATCAGATGTTCAGGAATTCATCCTCCG AGAACAGGAGCTCGTCAGGTGAAGAGGAGGACGATGATGACGAGAATGACTCGAGAGATCATGACCAGTCACCACCATGTGAGCTTTCATTCTGA
AA sequence Show only first row Show all	>Lus10031696 pacid=23180612 polypeptide=Lus10031696 locus=Lus10031696.g ID=Lus10031696.BGIv1.0 annot-version=v1.0 MESTQATISSAVRGNEAQNPIPNTIHFGSPPVTSPPAPAVAASGGTDGKKKRGRPRKYGPDGRLTATALSPTPISASIPISSSSSPAAPWKRGSRGRGLH SVKKQQRTTEYETPGAFAGNGVAYSVGANFTPHVITVNAGEDVMMKVMSFSQQSARAVCILSANGTISNVTLRRPTSSGGTLTYEGRFEILSLSGSLMPT DSGGTKIRSGGMSVSLAGPDGRVVGGGLAGLLIAAGPVQVVVGSFLPGHQMEQQTKQKKQRFEQQPPISVAPAPPPPVTVVSGQELKESYATAPPPKPAV VPLSSLFPEESNPPPPPPSFNNPIHQMFRNSSSENRSSSGEEEDDDDENDSRDHDQSPPCELSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	0	1
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	3.5	0.9646
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	4.2	0.9448
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	4.5	0.9416
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	4.5	0.9353
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	7.6	0.9495
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	8.1	0.9495
					Lus10041915 [exp]	8.7	0.9354
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	9.4	0.9415
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	9.4	0.9489
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	9.5	0.9488

Compare expression of checked genes

Lus10031696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.