Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031119 [exp] 138 / 2e-42 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129400 [exp] 48 / 1e-07 ND / Potri.015G131300 [exp] 42 / 3e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031697 pacid=23180700 polypeptide=Lus10031697 locus=Lus10031697.g ID=Lus10031697.BGIv1.0 annot-version=v1.0 ATGGTAGCTTTGACTTTAACAATGGAGGTAATCACTCAGGCGGTTTCCAACCCAATGTGGGTCTTCTTCTTCTGCAACATAATCATCGTCACCATCTTAC TCTCCTCTAAACCTCCTCCTCCTCCTCCTGATCATCCTCATCCTACTTGGTCCGGACACGTGTCAATCTCCAGAGCATCGTCGTGTGTGACCGTTACCAG GCATGCTCTGTTTCCCAGTGACGAAAACAGAGCACTTTCGAGTTCAAAACCAGAATGTCCGACGATCGAATTCGAAACGGGGAAAGGGGACGACGGTGAT GATGTAGAAGAAGAAGCAGAGGTGAGTGAAAAAGGGTGCTGCGATGAATTTAAGGAGGGTGGTGATGAGGATGAATTGAGGAAGAGAATTGAAGAGTTCA TAGAGAAGACGAACAAGGAATGGAGAGCAGAGTTGATTCGGAGTTCGAATTTGGTTCGTTGA
AA sequence Show only first row Show all	>Lus10031697 pacid=23180700 polypeptide=Lus10031697 locus=Lus10031697.g ID=Lus10031697.BGIv1.0 annot-version=v1.0 MVALTLTMEVITQAVSNPMWVFFFCNIIIVTILLSSKPPPPPPDHPHPTWSGHVSISRASSCVTVTRHALFPSDENRALSSSKPECPTIEFETGKGDDGD DVEEEAEVSEKGCCDEFKEGGDEDELRKRIEEFIEKTNKEWRAELIRSSNLVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031697 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	2.0	0.8270
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	2.4	0.8086
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	8.8	0.7600
AT1G72430			SAUR-like auxin-responsive pro...		Lus10037443 [exp]	12.1	0.7679
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	13.0	0.8281
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10004141 [exp]	15.6	0.7598
AT5G49170			unknown protein		Lus10006495 [exp]	21.3	0.8156
AT1G06980			unknown protein		Lus10025927 [exp]	21.8	0.8102
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	22.1	0.7904
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	22.9	0.8050

Compare expression of checked genes

Lus10031697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.