Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22660 233 / 1e-75 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031120 [exp] 374 / 4e-129 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1) Lus10036936 [exp] 316 / 5e-108 AT3G22660 281 / 1e-94 rRNA processing protein-related (.1) Lus10037050 [exp] 289 / 8e-98 AT3G22660 220 / 4e-71 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131200 [exp] 276 / 1e-92 AT3G22660 300 / 5e-102 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05890 [flax] [poplar] Ebp2 Eukaryotic rRNA processing protein EBP2
Representative CDS sequence Show only first row Show all	>Lus10031698 pacid=23180675 polypeptide=Lus10031698 locus=Lus10031698.g ID=Lus10031698.BGIv1.0 annot-version=v1.0 ATGGGGGCACCTAAACCAGTTACGAAAGATGCAGAGCTAATGGATGATGATGATAATGTATCATATGAAGATAATGTGGAATTCAGCGAAGATTCCGAGT CCGACTCAGATCAGGAAGGCGATGTGAAACTGGACGCCCCAGCCAAGGAAGCAATATTCAACAGAGATGGTCTCAACGACAAGCTCCAAGAGATTGCTTG GCCCGAGGATGCCAGCTGGCTACACAAGCTCTCCCTCGAAATCAATCAGAAGCAAGAAGTTGACGTGAACGATGACCTCACTCGCGAGATGGCATTCTAC ACCCAGGCATTAGAAGGCTCGAGGAGGGCATTCGAGAAGTTTGAAACCATGGGGCTTCCCTTCCTTCGGCCACCCGATTACTACGCCGAGATGGTGAAGT CGGACGCCCACATGGTGAAGATCAAGAACCGGCTCCTGGCCGAGAAGAGGAGCATGGAGGAAGCCGAGGAGAGGAGGAAAGCTCGCGAGGCGAAGAAGCT CTCGAAGGAGGTCCAAGCTCAGAAGCAGAAGGAGCGAGCCTCGCAGAAGAAGGGGGAGATTGAGAGTGTTAAGAAGTGGATGAAGCAAAGGAAGCAAAGC GGGTATGCTCCGGGGAAGGGCGACGAGCTGGATCTCGATTTCATCGGAGGGGGAGAAGAGAAGAAGCCGTTTTCAAAAACAAACAAGCAGAGGCCAGGGG TGAGTCCCGGGGATAGGTCGGGTGGCAAGGGGAGGAAGCCGTGGAAGAGTGGTAAGTCAGACAAGAAGAGGGATAGGAAGGAGTCAAAATTCGGGTTCGG AGGGAGAAAGGGGATGAAGAAGCAGAACACTGCTGAGACTACTGATGATTTCAAAGGGTTTAAGAAGACTGGTGCTGAAGGGAATAAGAGGAGGAGGCAG TGA
AA sequence Show only first row Show all	>Lus10031698 pacid=23180675 polypeptide=Lus10031698 locus=Lus10031698.g ID=Lus10031698.BGIv1.0 annot-version=v1.0 MGAPKPVTKDAELMDDDDNVSYEDNVEFSEDSESDSDQEGDVKLDAPAKEAIFNRDGLNDKLQEIAWPEDASWLHKLSLEINQKQEVDVNDDLTREMAFY TQALEGSRRAFEKFETMGLPFLRPPDYYAEMVKSDAHMVKIKNRLLAEKRSMEEAEERRKAREAKKLSKEVQAQKQKERASQKKGEIESVKKWMKQRKQS GYAPGKGDELDLDFIGGGEEKKPFSKTNKQRPGVSPGDRSGGKGRKPWKSGKSDKKRDRKESKFGFGGRKGMKKQNTAETTDDFKGFKKTGAEGNKRRRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	1.4	0.8636
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	2.0	0.8617
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	4.5	0.7906
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	4.9	0.8064
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	6.0	0.7953
AT5G27820			Ribosomal L18p/L5e family prot...		Lus10031487 [exp]	7.2	0.7240
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	9.4	0.7675
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	9.5	0.7587
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	10.5	0.7616
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	11.5	0.6948

Compare expression of checked genes

Lus10031698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.