Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25340 195 / 5e-56 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 148 / 2e-42 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 134 / 2e-33 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 97 / 5e-23 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G48580 92 / 1e-21 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 87 / 5e-20 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G10060 87 / 3e-19 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 91 / 7e-19 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 85 / 4e-17 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G55520 79 / 8e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031121 [exp] 633 / 0 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 226 / 6e-68 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 222 / 3e-66 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 103 / 5e-25 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 93 / 7e-22 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10025889 [exp] 90 / 3e-21 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10002339 [exp] 90 / 9e-21 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10003170 [exp] 89 / 2e-20 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 91 / 3e-19 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129200 [exp] 332 / 1e-107 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 238 / 1e-71 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.001G075500 [exp] 99 / 2e-23 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.007G000500 [exp] 100 / 4e-22 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 89 / 1e-20 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.014G149400 [exp] 89 / 2e-18 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 87 / 6e-18 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.016G096600 [exp] 83 / 7e-18 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 84 / 8e-17 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 79 / 9e-17 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10031700 pacid=23180791 polypeptide=Lus10031700 locus=Lus10031700.g ID=Lus10031700.BGIv1.0 annot-version=v1.0 ATGCCACGTGTCAACCACAACCGAACAACGCGGGAGCCGGCCCAAGAAGAGTTTACCGCTCTCAGTTCTTCACTCCGCACCCCGCAGGGTTTTAGAGAAG CAAAGAAAACGGCACCGAGAGCTAGGGTTTTAGCAGAGAAGAAGAAGAAGAACAACAACAACAGTAAGAAGGAAATCGAAATTTCTTCTCCGATGACAGG CTTTTGGGGTATTGAAGTGAAGCCAGGCGAATCCTGTACTTACCGATCCGAGAACGATGATGAGACGCTTTACGTCACTCAGGCAACTCTCGGCGTCGGT TCCGCAACGGATAGGACCATTCTCCAGTGCTCCGTCGACGAGAAGTCTCCCGTGTTCTTGTGCTCGTTGTTGCCGGAGAAGACCGAGTCCTGCGCATTGA ATCTCGTTTTCAGATATGACGAGGTTGTATTGTTCTCGGTAGTCGGCGAATCCAGTGTTCATATTTCTGGATACGTTGCGGTCGACGAAGATGAGTCTGA TCATGAGGATGAGCGAGGAGAGGATATAGCTGAGACGGAATCGGACGAGTCCAGCGATTTCGAGTATGGTGATGAGTTTGATGAGAGTGATGATGACGAC TTTATCGATGATGATGAGGAGGAAGGACTCAATGTGTTTAGGTCGTCTCCTCCTCGAAAAAGCGGAGTTGTTATTGAGGAGATTGTAGATGACGAGGAAC CTGAAAATGGTGATGGAGATGGATTGTCAAAGCGAAAGAAGAAAAATGAGAAAAAGAAGAAGAATAAGAAGGAGAACCAGCTGGCTGAGGAAGATGACTC TGGAAAGCAGATTGTCTTGAAGAGTAATCCTGGTGCTGGTGCCTCTGTGCTGGAAAGTGAAGACGAAGATGGTTTTCCAGTTTCTAAAGCGGATGAGGGG AAGGGTGATGTTCAAGAATCTACGCCTGAAGCGAATGTAGAAGGTAAGGGTAAAGATTTGAAGAAAAAGAAGAGGAAAGTAAAGGCTACTGAACCAGATG GCCAACCAGAAAAGAAAAAGAAGAAGAAGCAGCAGATAAAGAAAAGCAAGGAGGAAATTGCTGCTGCTATGGATGAGGACGATCAGAAAGAACCAGCTGG GGAGGAAACACAGACTGTGGATACCAATGATGGTACTGAAAGGAAAATCAATGCTGAAGTAGGAAGTGCACCTTCCGAAACTTCACCAGCTAAGAAACAG AAGAAAAATAAGAACAAGAAAGCAAATGCTGATGGGGAAACAAATGTTGAAACTGTTCCGGGTAAAGGAGGTGAAGCAAAAAAATCCGCCATGGATTCTG CTGCCAAGCAATCTGCTTCTAAGTATTCGAAAGAAAGAACCTTCCCAAATGGGCTGGTTATTGAGGACCTAGCTATAGGCAAACCAAATGGTAAAAGGGC TTCTCATGGAGATCAGGTCAGTGTGCACTACATTGGCAAGCTGAAGAAGAATGGAAAGATATTCGATTCGAACATTAGAAAGAAACCGTTTCAGTTCCGC CTAGGCGTTGGTAAAGTCATCAAAGGATGGGATGTTGGTGTTGAGGGCATGAGAGTTGGAGACAAGAGGAGGATCACTATCCCTCCAGCCATGGGATACG GGCATAAAGGTGCTGGACGCGATATTCCTCCGAATTCATGGCTGGTGTTCGACGTGGAATTGGTGAATATCGGTTGA
AA sequence Show only first row Show all	>Lus10031700 pacid=23180791 polypeptide=Lus10031700 locus=Lus10031700.g ID=Lus10031700.BGIv1.0 annot-version=v1.0 MPRVNHNRTTREPAQEEFTALSSSLRTPQGFREAKKTAPRARVLAEKKKKNNNNSKKEIEISSPMTGFWGIEVKPGESCTYRSENDDETLYVTQATLGVG SATDRTILQCSVDEKSPVFLCSLLPEKTESCALNLVFRYDEVVLFSVVGESSVHISGYVAVDEDESDHEDERGEDIAETESDESSDFEYGDEFDESDDDD FIDDDEEEGLNVFRSSPPRKSGVVIEEIVDDEEPENGDGDGLSKRKKKNEKKKKNKKENQLAEEDDSGKQIVLKSNPGAGASVLESEDEDGFPVSKADEG KGDVQESTPEANVEGKGKDLKKKKRKVKATEPDGQPEKKKKKKQQIKKSKEEIAAAMDEDDQKEPAGEETQTVDTNDGTERKINAEVGSAPSETSPAKKQ KKNKNKKANADGETNVETVPGKGGEAKKSAMDSAAKQSASKYSKERTFPNGLVIEDLAIGKPNGKRASHGDQVSVHYIGKLKKNGKIFDSNIRKKPFQFR LGVGKVIKGWDVGVEGMRVGDKRRITIPPAMGYGHKGAGRDIPPNSWLVFDVELVNIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	0	1
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	1.7	0.9008
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	2.0	0.8659
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	2.0	0.8383
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	4.6	0.8556
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	4.9	0.8064
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	7.5	0.8101
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	10.2	0.7940
AT1G73770			unknown protein		Lus10013498 [exp]	13.6	0.7380
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	15.2	0.7816
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	16.2	0.7829

Compare expression of checked genes

Lus10031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.