Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 160 / 5e-49 Protein of unknown function (DUF1442) (.1) AT3G60780 76 / 9e-17 Protein of unknown function (DUF1442) (.1) AT2G45360 76 / 1e-16 Protein of unknown function (DUF1442) (.1) AT1G62840 48 / 1e-06 Protein of unknown function (DUF1442) (.1) AT1G12320 46 / 6e-06 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031122 [exp] 379 / 3e-135 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 211 / 1e-68 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 57 / 1e-09 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 57 / 2e-09 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 52 / 6e-08 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1) Lus10032203 [exp] 40 / 0.0004 AT2G45360 125 / 1e-36 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128900 [exp] 250 / 2e-84 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 245 / 2e-82 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 174 / 2e-54 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 86 / 3e-20 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 81 / 7e-19 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 76 / 1e-16 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 74 / 6e-16 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 72 / 3e-15 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 64 / 4e-12 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10031701 pacid=23180744 polypeptide=Lus10031701 locus=Lus10031701.g ID=Lus10031701.BGIv1.0 annot-version=v1.0 ATGGCTTGTTGGTCAGCAGAGAATGCCACAAATGCCTACCTCAAAACCCTAAGAATGGGCGAGAAAGCGAAAGAGCCAGAAGCGGCCGAGTTCATCTCAG CATTAGCGGCCGGAAACAACTCCCAACTAATGGTCATCGCGGCCTCCTCCACCTCACCTTCCGTCACGTCATCCACCCTAGTGGCACTCGTGGCGGCAGC TTACCAGACCGGCGGTCGAGTCATTTGCATCCACCCGAACCAAGAGGAAACCGTTATGTCGTCCATCGGGCTCGAATCAGGTTGCCATGTGGAGTTTGTA TCCGGGCCGGCCCAAGAGCTGCTCACGGCCCAATACAGCGACGCGGATTTCGTTGTCGTGGACTGCAACTTGGACAACCACGAGAGGGTGTTGGAGGGAG TGCAAAACGGCAGCGGAATGGGCCGAAACGGCGTCGTGGTAGTTGGGTACAATGCGGGTAGTGATAAAAAAGGGTACTCGTGGTGTTCAAGTGGGTGGAA GACTCAGCTGTTGCCTATCGGGGAAGGGTTGCTAGTGACGAGGATGGCGCCACCGGCGAGGAAAGCTCCGGTGGTCGGAGGTGGAGGGTGTAGTAGGAAG AGCCGGTGGGTCGTGAAGGTGGATGAATGCACCGGTGAAGAGCATGTGTTTAGGGTTAGGTTTCCGCAAGGTAAACGGATTGAAGCGTAG
AA sequence Show only first row Show all	>Lus10031701 pacid=23180744 polypeptide=Lus10031701 locus=Lus10031701.g ID=Lus10031701.BGIv1.0 annot-version=v1.0 MACWSAENATNAYLKTLRMGEKAKEPEAAEFISALAAGNNSQLMVIAASSTSPSVTSSTLVALVAAAYQTGGRVICIHPNQEETVMSSIGLESGCHVEFV SGPAQELLTAQYSDADFVVVDCNLDNHERVLEGVQNGSGMGRNGVVVVGYNAGSDKKGYSWCSSGWKTQLLPIGEGLLVTRMAPPARKAPVVGGGGCSRK SRWVVKVDECTGEEHVFRVRFPQGKRIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62280			Protein of unknown function (D...		Lus10031701 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10023154 [exp]	6.5	0.8820
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	8.1	0.9112
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	10.4	0.9029
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	11.3	0.8974
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	13.2	0.8476
					Lus10010481 [exp]	13.4	0.9003
AT5G46090			Protein of unknown function (D...		Lus10015396 [exp]	17.3	0.8557
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	17.5	0.8540
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	18.4	0.8965
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	19.9	0.8905

Compare expression of checked genes

Lus10031701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.