Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51560 784 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 689 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 602 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 208 / 1e-57 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 199 / 1e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 198 / 4e-53 Leucine-rich receptor-like protein kinase family protein (.1) AT3G25560 186 / 3e-50 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G15300 180 / 7e-48 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 180 / 1e-47 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 178 / 4e-47 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031123 [exp] 1273 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 617 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 611 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 601 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 510 / 3e-173 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 322 / 6e-107 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10003612 [exp] 193 / 3e-51 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10022738 [exp] 192 / 3e-51 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 189 / 2e-50 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130100 [exp] 908 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 879 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 719 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 696 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 665 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 640 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 215 / 3e-59 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G108000 [exp] 210 / 6e-59 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 200 / 2e-55 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G058200 [exp] 192 / 1e-51 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031703 pacid=23180702 polypeptide=Lus10031703 locus=Lus10031703.g ID=Lus10031703.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTTCACTATTCTTCTTCATTCTATTCCTCATTCAAGCTGAATCCGCAGCCAACACAGAGCTGAAACCCTTGCTGGAGTTCAAATCAGCGC TGGACCCGGAGTCCAAGTTTCTGGCCTCGTGGAAAGTCGACGGAAACCCGTGTGACGGTTCCTTTGAAGGCGTCGGGTGCAATGAACAGGGTCAAGTTGC TAACATCTCGTTGCAAGGGAAGGGCCTTAAGGGGGAGATTTCACCGGCGGTTGGGAGCTTGAAGAACCTGACTGGGTTGTACTTGCATTACAATGCCTTG TACGGTGAAGTCCCAGCAGAAGTTGGGAACTTGACTGAGCTCGTTGACTTGTACTTGAACGTCAACAATCTCTCCGGCCAAATCCCGCCTGAGATTGGGA ACTTGGGTAAACTCCAAGTGTTGCAGTTATGCTACAACCAGTTCACTGGAAGTGTACCAGTACAGCTTGGCACATTGAAGAAGCTTACTGTCTTAGCGCT TCAGTCGAACCGATTCAGCGGTGCGATCCCAGCGAATCTGGGGAATCTCGGGATGCTGATGCGGCTCGATTTGAGCTTCAACCATTTCTTCGGCTCGATC CCAACGAAGCTCGCCGACGCTCCGGTGCTCGAGTCTCTCGACATCCGTAACAACACCTTCTCCGGCAATGTACCCCTTGCTCTAAAGAGGCTAAACGAAG GCTTCCTATTTGCAAACAACCCGGGACTGTGCGGGTCGGGTTTCATGGACCTAAGGGCATGCAACTCATCAGAAGGGACAAATCCAAACAGACCGGAAGC ATTCGGACAAGGCGGGCAACCAACAAAAACACGAGAAATCCCCGAAACAGCAGACTTAACCCTCCCTTGCAGCATCAACCAAACCAACTGCACAAACCCA TCAGCAAGAAACCACCACCACCAAGCATCATTGTTCATCATAGGTTCAGTCTTTGTAACACTCACATTACTAGCCACGTCAGCACTCTCCTACACTCACT ACCGCCGCAGGAAACAGAAGCTCTCTGATTCAGCGAACGTTGACCAGTCAACTTCTGATCATCAACAACCATCAGGGTACAGGAAGAACGGGTCTCCGTT GATCAGCCTCGAGTACCCGAATGGGTGGGACCCGCTGGCTGACCATGGAAGGAGACATAATAACAATGCTGCTAGTACTAATGGTGATGCATTGTTCCAC AGCTTCAAGTTCAACTTGGAGGAGATCGAGACCGCGACCCAGTACTTCTCCGAGTCGAACGTGTTGGGAGGCGGGAAGAAGTTCAAATTCTCTGCTACAT ATAAGGGAATCCTGAGAGATGGATCTTCTGTTGCTGTGAAGTGCATTAGTAAGAGCAGCTGCAAGTCTGACGAAGCAGAGTTTCTGAGAGGGTTGAATGT GTTGACTTTGTTGGGTCATGAGAATTTGGTGAGGTTTCGAGGGTTTTGTTGCTCGAGGGGACGTGGCGAATGCTTCGTGGTGTATGATTTTGTTCCCAAT GGGAACTTGATGAGGCATTTGGATGTTGCTGCTGAGGATGTTGGTGGTGGTGATGATGAGCTTGTTCTTGAATGGTCCACTAGAGTCTCCATTGTTAAAG GCATAGCCAAAGGCATAGCGTATCTGCACAGCTACAAACCCAACAAGCCATCCATAATCCACCAGAACATAACAGCAGAGAAAATCCTGATAGACAAAAG GCACAACCCAATGGTATCAGGGTCAGGCCTGCAGAGCCTCCTGACAAACGACGCCGTTTTCTCAGCACTCAAGGCCAGTGCAGCAATGGGGTACATGGCT CCGGAGTACTCGACTACGGGGAAGTTCACGGACAAGAGCGACGTGTACGCATTCGGAGTGGTCGTGTTCCAGGTCCTATCCGGGAAGCGTAAGGTCTCGA ATCTGATCCGATTAGGTGCTGAGTCGTGTCGTTTCGAGGACTACTTGGATGCCAACCTCAAAGGGAGGTTCTTTGAGTATGAAGCTGCTAAGCTTGCTAG GATTGCATGGATTTGTACCCACGAGTCACCTGTTGAGAGGCCTTCCATGGAAGCTGTTGTTCAGGAACTGGGGAACTGTAGTAGTTGCATTTAG
AA sequence Show only first row Show all	>Lus10031703 pacid=23180702 polypeptide=Lus10031703 locus=Lus10031703.g ID=Lus10031703.BGIv1.0 annot-version=v1.0 MAIASLFFFILFLIQAESAANTELKPLLEFKSALDPESKFLASWKVDGNPCDGSFEGVGCNEQGQVANISLQGKGLKGEISPAVGSLKNLTGLYLHYNAL YGEVPAEVGNLTELVDLYLNVNNLSGQIPPEIGNLGKLQVLQLCYNQFTGSVPVQLGTLKKLTVLALQSNRFSGAIPANLGNLGMLMRLDLSFNHFFGSI PTKLADAPVLESLDIRNNTFSGNVPLALKRLNEGFLFANNPGLCGSGFMDLRACNSSEGTNPNRPEAFGQGGQPTKTREIPETADLTLPCSINQTNCTNP SARNHHHQASLFIIGSVFVTLTLLATSALSYTHYRRRKQKLSDSANVDQSTSDHQQPSGYRKNGSPLISLEYPNGWDPLADHGRRHNNNAASTNGDALFH SFKFNLEEIETATQYFSESNVLGGGKKFKFSATYKGILRDGSSVAVKCISKSSCKSDEAEFLRGLNVLTLLGHENLVRFRGFCCSRGRGECFVVYDFVPN GNLMRHLDVAAEDVGGGDDELVLEWSTRVSIVKGIAKGIAYLHSYKPNKPSIIHQNITAEKILIDKRHNPMVSGSGLQSLLTNDAVFSALKASAAMGYMA PEYSTTGKFTDKSDVYAFGVVVFQVLSGKRKVSNLIRLGAESCRFEDYLDANLKGRFFEYEAAKLARIAWICTHESPVERPSMEAVVQELGNCSSCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	0	1
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	1.4	0.9873
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	1.7	0.9754
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	2.8	0.9781
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	4.6	0.9705
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	5.7	0.9557
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	6.0	0.9731
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	6.7	0.9651
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	7.1	0.9555
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	8.7	0.9711
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	9.5	0.9634

Compare expression of checked genes

Lus10031703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.