Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 89 / 1e-21 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT3G23820 87 / 8e-21 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G00110 87 / 8e-21 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 86 / 1e-20 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 79 / 7e-18 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 71 / 5e-15 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038911 [exp] 92 / 1e-23 AT1G02000 440 / 8e-156 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10027195 [exp] 92 / 1e-23 AT1G02000 441 / 4e-156 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10016640 [exp] 94 / 4e-23 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 92 / 1e-22 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10030281 [exp] 87 / 7e-21 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 87 / 8e-21 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10023077 [exp] 86 / 1e-20 AT1G02000 244 / 2e-77 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10015876 [exp] 86 / 2e-20 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 86 / 3e-20 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128200 [exp] 98 / 6e-25 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 86 / 1e-20 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.002G146500 [exp] 85 / 4e-20 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 84 / 7e-20 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 84 / 8e-20 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.002G116750 [exp] 77 / 9e-19 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.018G100400 [exp] 70 / 8e-15 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 67 / 8e-14 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.001G320000 [exp] 0 / 1 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031707 pacid=23180749 polypeptide=Lus10031707 locus=Lus10031707.g ID=Lus10031707.BGIv1.0 annot-version=v1.0 ATGAAATATCGCATAAATAAAGGCGATGAACACGACAAATCGATCATCAATCGCCTATTTAACATCTACGAAGGACCCAATGGGTTCACGGTGGCTAGGG ATTTCACCTACATCGACGATGTAGTGAAGGGGTGTTTGGCGACGGTGGACACGGCGGGGAAGACCACCGGCGGCGGAGGAGTGAAGAAAGGAGAAGCTCA GTTGAGGGTTTATAACTTGGGGAATACTTCGCCTGTTCCCGTGGGGGAGCTGGTGAGTATATTGGAGAAGCTGTTGAAGGTTAAGGCGAAGAAGAAGGTG ACGCCGATGCCGGAGAACGGCGACGTTTGTTCACTCATGCGAATGTTAGTTTGGCGAAGAGGGATTTTGGGTACGAGCCAACCACCGTTTTGGAGACTGG GTTGA
AA sequence Show only first row Show all	>Lus10031707 pacid=23180749 polypeptide=Lus10031707 locus=Lus10031707.g ID=Lus10031707.BGIv1.0 annot-version=v1.0 MKYRINKGDEHDKSIINRLFNIYEGPNGFTVARDFTYIDDVVKGCLATVDTAGKTTGGGGVKKGEAQLRVYNLGNTSPVPVGELVSILEKLLKVKAKKKV TPMPENGDVCSLMRMLVWRRGILGTSQPPFWRLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10031707 [exp]	0	1
AT1G60370			F-box and associated interacti...		Lus10008162 [exp]	1.7	0.8175
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	4.5	0.8384
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	4.9	0.8249
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	4.9	0.8047
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	4.9	0.7538
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	10.6	0.8013
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	12.0	0.8084
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	13.4	0.8071
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	14.5	0.7821
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	16.7	0.7982

Compare expression of checked genes

Lus10031707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.