Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60750 1209 / 0 Transketolase (.1.2) AT2G45290 1201 / 0 Transketolase (.1) AT4G15560 44 / 0.0006 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031128 [exp] 1224 / 0 AT2G45290 1130 / 0.0 Transketolase (.1) Lus10030283 [exp] 1063 / 0 AT2G45290 1121 / 0.0 Transketolase (.1) Lus10000789 [exp] 1060 / 0 AT2G45290 1106 / 0.0 Transketolase (.1) Lus10004750 [exp] 1025 / 0 AT2G45290 1054 / 0.0 Transketolase (.1) Lus10007839 [exp] 72 / 1e-14 AT3G60750 84 / 1e-19 Transketolase (.1.2) Lus10012724 [exp] 48 / 3e-05 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 44 / 0.0007 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146300 [exp] 1216 / 0 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.014G068200 [exp] 1207 / 0 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 705 / 0 AT3G60750 764 / 0.0 Transketolase (.1.2) Potri.007G058500 [exp] 50 / 7e-06 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain CL0254 [flax] [poplar] THDP-binding PF00456 [flax] [poplar] Transketolase_N Transketolase, thiamine diphosphate binding domain
Representative CDS sequence Show only first row Show all	>Lus10031708 pacid=23180799 polypeptide=Lus10031708 locus=Lus10031708.g ID=Lus10031708.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCAGCTTCTTCCACGCTCTCCCTCCTCTCCCGCTCAATCCCCAACCACAATTCTCCCCTCCCCGCTTCTTCTTCCCACTCCCCCCTCC TCTCCATCCCTTCCTCCGCCAGAGCCGCCATCTACCGCCGCCGCCGATCGACCTCCTCCGTTGTAATCCGAGCTACGGCTGTGGAAACCCTGCAGAAGGC CGACACGGAGCTGGTGGACAAGTCGGTGAACTCGATTAGGTTCCTGGCGATCGATGCAGTTGAAAAGGCCAACTCGGGTCACCCGGGTTTGCCCATGGGT TGCGCCCCGATGGGTCACATTCTTTACGACGAGGTCATGAGGTATAACCCCAAGAACCCTTACTGGTTCAACCGGGATCGGTTTGTTTTGTCCGCTGGTC ACGGTTGCATGTTGCAGTACGCCCTTCTCCACCTCGCCGGCTACGACAGCGTCAAGGAGGAAGATTTGAAGCAATTTCGTCAATGGGGGAGCAGAACACC TGGACATCCCGAGAACTTTGAAACTCCTGGAGTTGAAGTGACCACTGGTCCATTGGGTCAAGGTATTGCCAATGCAGTTGGATTAGCTCTAGCAGAGAAG CATTTGGCTGCTAGATACAACAAACCAGACGCAGAGATCGTCGATCACTACACGTATGTGATATTGGGAGATGGATGTCAAATGGAAGGGATCTCGAACG AAGCGTGCTCCATAGCTGGGCATTGGGGACTTGGCAAGCTCATTGCTTTATACGACGACAACCACATCTCGATCGATGGAGATACCGAGATTGCCTTCAC CGAGAGCGTTGATACTCGCTTCGAGGCGCTAGGATGGCACGTGATCTGGGTGAAGAATGGTAACAATGGTTACGACGAGATCAGAGCTGCTATTGAGGAG GCCAAGGCTGTCAAGGACAAGCCTACTATGATTAAGGTTACTACAACGATCGGGTTCGGTTCCCCAAACAAAGCAAACTCATACAGTGTCCATGGAGCTG CATTAGGCACTTCGGAAGTCGAAGCCACAAGGAAGAATCTCGGCTGGCCTTACGAGCCATTCCATGTTCCGGAGGATGTTAAGAAGCATTGGAGCCGCCA CACCCCTGCCGGAGCTGCACTCGAATCCGAATGGAACGCAAAGTTCGCCGAGTACGAAAAGAAGTACCCCGAAGAAGCTGCTGAGTTGAAGTCCATCACC ACCGGCGAATTCCCAGCCGGTTGGGAATCAGCACTTCCGACCTATACACCAGAGAGTCCAGCAGACGCTACCCGGAACCTATCTCAGCAGAACCTCAACG CACTCGCCAAGGTTCTTCCGGGATTCCTCGGAGGAAGTGCCGATCTCGCCTCCTCCAACATGACGCTGATGAAAATGTACGGAGATTTCCAAAAGGCCAC TCCCGAGGAGCGAAACCTCCGATTCGGAGTAAGAGAGCACGCAATGGGAGCCATCTGCAACGGGATAGCACTCCACAGCCCCGGATTTGTTCCTTACTGC GCAACATTCTTCGTCTTCACCGACTACATGAGAGCAGCAATAAGGATCTCAGCCTTATCCGAAGCTCCAGTCATCTACGTGATGACCCACGACTCGATCG GACTGGGAGAGGACGGCCCAACCCATCAGCCCATCGAGCATGTCGCAAGCTTCAGAGCCATGCCTAACATCTACATGTTCAGGCCAGCAGACGGTAACGA GACAGCCGGAGCCTACAAGGTAGCTGTCGAGAGCAGGAAGACTCCGTCAATTCTCGCACTTTCGAGACAGAAGCTCCCACACCTTCCAGGGACATCGATC GAGGGAGTTTCCAAGGGAGGGTACACAATCTCGGACGATTCCACGGGAAACAAGCCTGATGTCATCCTTGTTGGGACGGGTTCGGAGCTTGAGATTGCTG CGAAAGCCGGTGACTTGTTGAGGAAGGAAGGGAAAACTGTTCGTGTTGTGTCGCTAGTTTCGTGGGAGCTTTACGAGAAGCAGTCTGATGAATACAAGGA GAGTGTTTTCCCAGCTGGTGTGACTGCTAGAGTGAGTATCGAGGCGGCTTCGACTTTCGGATGGCATAAGATTGTTGGGGATAAGGGGAAGGCTATTGGT ATTGATAAGTTTGGTGCGAGTGCTCCTGCTGGGAAGATCTATAAGGAGTATGGGATTACTGTGGAGGCTGTTGTTGAAGCTGCTAAGTCTATGTTCTAA
AA sequence Show only first row Show all	>Lus10031708 pacid=23180799 polypeptide=Lus10031708 locus=Lus10031708.g ID=Lus10031708.BGIv1.0 annot-version=v1.0 MAAASASSTLSLLSRSIPNHNSPLPASSSHSPLLSIPSSARAAIYRRRRSTSSVVIRATAVETLQKADTELVDKSVNSIRFLAIDAVEKANSGHPGLPMG CAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEK HLAARYNKPDAEIVDHYTYVILGDGCQMEGISNEACSIAGHWGLGKLIALYDDNHISIDGDTEIAFTESVDTRFEALGWHVIWVKNGNNGYDEIRAAIEE AKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGAALGTSEVEATRKNLGWPYEPFHVPEDVKKHWSRHTPAGAALESEWNAKFAEYEKKYPEEAAELKSIT TGEFPAGWESALPTYTPESPADATRNLSQQNLNALAKVLPGFLGGSADLASSNMTLMKMYGDFQKATPEERNLRFGVREHAMGAICNGIALHSPGFVPYC ATFFVFTDYMRAAIRISALSEAPVIYVMTHDSIGLGEDGPTHQPIEHVASFRAMPNIYMFRPADGNETAGAYKVAVESRKTPSILALSRQKLPHLPGTSI EGVSKGGYTISDDSTGNKPDVILVGTGSELEIAAKAGDLLRKEGKTVRVVSLVSWELYEKQSDEYKESVFPAGVTARVSIEAASTFGWHKIVGDKGKAIG IDKFGASAPAGKIYKEYGITVEAVVEAAKSMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	0	1
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	1.0	0.9790
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	2.0	0.9537
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	5.5	0.9430
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	6.0	0.9411
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	6.9	0.9383
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	7.3	0.9315
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	8.5	0.9198
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	8.7	0.9397
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	8.7	0.9198
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	9.2	0.9257

Compare expression of checked genes

Lus10031708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.