Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51550 357 / 2e-124 EXL3 EXORDIUM like 3 (.1) AT2G17230 248 / 2e-81 EXL5 EXORDIUM like 5 (.1) AT2G35150 207 / 8e-66 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT5G64260 115 / 1e-30 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 109 / 2e-28 EXL4 EXORDIUM like 4 (.1) AT1G35140 108 / 5e-28 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT4G08950 104 / 2e-26 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT3G02970 50 / 5e-07 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031130 [exp] 406 / 9e-144 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10026548 [exp] 235 / 2e-76 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10013834 [exp] 233 / 2e-75 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10018314 [exp] 216 / 3e-69 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017138 [exp] 187 / 2e-59 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10021370 [exp] 107 / 2e-27 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 106 / 6e-27 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 100 / 7e-25 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10013789 [exp] 78 / 1e-16 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129700 [exp] 352 / 1e-122 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 351 / 4e-122 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.009G167800 [exp] 242 / 3e-79 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.004G206600 [exp] 239 / 5e-78 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G122100 [exp] 216 / 3e-69 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.005G163000 [exp] 129 / 9e-36 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163600 [exp] 117 / 3e-31 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 117 / 3e-31 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 116 / 8e-31 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098600 [exp] 114 / 5e-30 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10031709 pacid=23180733 polypeptide=Lus10031709 locus=Lus10031709.g ID=Lus10031709.BGIv1.0 annot-version=v1.0 ATGGGCCCGGTCTTAACCAACAACATAACCGTACACACCATCTGGTACGGAAACTGGCTAAAACCTCAGAAAAAAATCATCCGTGAATTCATCTCTTCCA TCTCCGCCGCCGCATCCCCTCACCCTTCCGTCGCCGGCTGGTGGAAGACCATCCTAGTCATCAAATCCGCCGTTACTTCCAGATCTAAGCCGCTTCCGGT CAACCCGAAGAGTGGACTCTACCTTTTGTTGACCTCCGATGACGTGTACGTCCAGGATTTCTGCGGCCAGGTCTGTGGGTTCCACTACTTCACTTTCCCT TCCATCGTCGGATACACGCTCCCGTACGCCTGGGTTGGGAACAGCGCCAAGCTCTGCCCGGGAGTTTGTGCTTATCCGTTCGCCGTGCCGGAGTACATGC CGCAGATGAAGCCGATGAGGGCTCCGAACGGTGACGTGGGCGTCGACGGGATGATTAGTGTGATTGGGCACGAGATTGCTGAGCTGGCGACGAATCCGTT GGCGAATGCTTGGTACGCCGGCGGGGGCCCCAGGTTTTCCGGAGGGGGAAGAAATTTTCCGGTGGAGATTGCTGACTTGTGTGAGGGTATTTACGGGACT GGCGGTGGAGGGTCGTATACTGGACAGATGTTGGAGGGACAGGATGGTGCCACGTATAATATGAATGGGATCAGACGGCGGTACTTGGTTCAGTGGGTTT GGAACCATTTAGTTAATTACTGTTCTGGCCCTAATGCTTTGGATCAGTAG
AA sequence Show only first row Show all	>Lus10031709 pacid=23180733 polypeptide=Lus10031709 locus=Lus10031709.g ID=Lus10031709.BGIv1.0 annot-version=v1.0 MGPVLTNNITVHTIWYGNWLKPQKKIIREFISSISAAASPHPSVAGWWKTILVIKSAVTSRSKPLPVNPKSGLYLLLTSDDVYVQDFCGQVCGFHYFTFP SIVGYTLPYAWVGNSAKLCPGVCAYPFAVPEYMPQMKPMRAPNGDVGVDGMISVIGHEIAELATNPLANAWYAGGGPRFSGGGRNFPVEIADLCEGIYGT GGGGSYTGQMLEGQDGATYNMNGIRRRYLVQWVWNHLVNYCSGPNALDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	0	1
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	3.3	0.8821
AT1G67350			unknown protein		Lus10037020 [exp]	5.2	0.8715
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	5.5	0.8618
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	9.4	0.8522
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	10.4	0.8620
					Lus10020006 [exp]	10.9	0.8768
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	12.0	0.8559
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	15.3	0.8494
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10020345 [exp]	17.2	0.8561
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	18.2	0.8476

Compare expression of checked genes

Lus10031709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.