Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25270 669 / 0 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G25280 286 / 1e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G46790 300 / 2e-91 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 291 / 3e-86 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 282 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G14820 283 / 2e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 277 / 7e-82 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G08070 276 / 7e-82 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 271 / 2e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 268 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031135 [exp] 345 / 3e-114 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017446 [exp] 297 / 8e-89 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 285 / 2e-86 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 282 / 2e-85 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 285 / 3e-85 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 280 / 1e-84 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018978 [exp] 288 / 5e-84 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 282 / 7e-84 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008136 [exp] 279 / 1e-83 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128800 [exp] 688 / 0 AT4G25270 664 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G129000 [exp] 313 / 6e-102 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G059400 [exp] 301 / 8e-90 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 290 / 2e-88 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 295 / 2e-87 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 289 / 2e-87 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 296 / 7e-87 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 288 / 7e-87 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 287 / 5e-86 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 285 / 6e-86 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031714 pacid=23180727 polypeptide=Lus10031714 locus=Lus10031714.g ID=Lus10031714.BGIv1.0 annot-version=v1.0 ATGTGGAGGCGCATATCGTCGTCGACTTCGCTCATTGGGGTTAGCTACGCAACTTCTTCCCTCAGAGAGAAAAATCCTTTCATCACTTTCGTATTAGGTG GCCCTGGAAGTGGAAAAGGAACTCAATGCGAAAGAATTGCAGCTACGTTTGGGTTCACACATCTGAGTGCTGGAGATTTGCTTAGGAAGGAAATCCTAAC CAACAGTAAAGAGCGAGCTGCAATCCTCAACATAATCAAAGATGGCAAGATCGTCCCCTCAGAGGTCACTGTCAAGCTGATCCTGAAGGAGATGGAGTCA AGTCACAGCAACAAGTTCCTTATCGATGGGTTCCCACGAACCGAAGAGAATCGTGAGGCCTTCGAACGAATCATTGGATTAGAACCGAATGCTGTGCTGT TCTTCGATTGCCCAGAAGAAGAAATGGTGAAAAGGGTGCTGAACCGTAACCAGGGACGAGTCGATGACAACATAGACACATTCAAGAAACGTTTGAAAGT ATTTGAAGCAATGAGCCTTCCTGTTGTTGACCACTACTCCAAGAAAGGAAAACTGCACAAGATAAACGCGGTGGGAGACGTGGACGAAATCTTCGAACAA GCTCGCGCTGTTTTCGCTGCACCAGAGCTTATTAATCAAATAATCTGCTTCCGTTTTCTTCTCCCCGCCTTTCCTTCCTCGGAGATGGCGCTTATTCTAC CGCCGACGACGACGACGACGACGGCGACAATCTCCTCGCCGGGGATGTTCCTTCGCTGCGCGGCAAGTACAAGGAAGACAAGGAAACAGAAGCTTACCCG GAAGCTAGAGAAATGGCAAGGGAATACTGGTACGTCGCTCTCGTTTCCAAAATCATCTCCGACGCCGATTCTAATCAACAGAGAACGCATCCCGCGGACT CAGCTGGAAGCTCTGGATAAAGTTGTGGAGGACATCGAGACCTCCATCCAGAAAGGAATCCACATGGACGCGGAAACCTTCGCGTCTCTTTTAGAAACGT GTTACCGATTGGGATCGATCGAACACGGTTTCCGAATCCATCGCCTGCTACCGAAGCCGCTCCTGCGGAAGAACTTTGGAATCGGAGCGAAGCTGATGCG GCTGTACGCTTCGTCCGGGTACTTGGACGAGGCACACCAGGTGTTCGACGAAATGTCCAGGAGAACTGAGTCGGCCTTCGCTTGGAACTCGTTGATTGCT GGGTATGCCGAAATGGGACAGTACGAAGATGCAATGGCGCTCTACTTCCAGATGGAGGAAGACGGCGTGAAACCAGATAGGTTCACTTTCCCCAGAGTGT TGAAAGCTTGTGCTGGAATTGGCGATATTCAGGTCGGTGAAGCAGTGCATAGAGATGTCATTCGGTTTGGGTTTGGTTATGATTCGTTCGCGATGAATGC TCTGGTCGATATGTATGCGAAATGCGGCGACATCGTTAAAGCTCGGACGATATTCGACAGGATTGGTAGTAAAGACTCGATTTCGTGGAACTCGATGCTC ACTGCCTATGTTCGCCACGGTCTCGTAGCAGAAGCGTTACGAATTTTCGGCAGAATGGTGAGCCAAGGAGTCGAACCGGACTCGGTCACCATATCGATTA TCGTAGCGAACGCTTCGTGTTTCGAGCTTAACTTCCAGCTCCACGGATGGGTGATCAAGCGAGGGATGATGCAGTGGGAAGTGTCCATAGTCAATTCATT GATGGTCTTTTACGCAACCAAAGGAGAACTAAACCTTGCACGCCAATTGTTCGACGAAATGCCCGATAGAGACATCGTATCGTGGAACTCGATTATCTCA GCTCACAAGAACCGCCGTGAATCTCTGTCCTACTTTAAGAAGATGGAGGCCGAGAACGTGATCCCGGACAACATCACATTCGTCGCAATTCTATCGGCGT GCGCTCATCTGCGATTGGTCGAAGAAGGGGAGAGGGTGTTCGATCTTTTGAGACGGAAGTATAAAATGAGACCCATCATGGAGCATTACGCGTGCATGGT GAATCTGTACGGGAGGGCTGGACTGGTCAAGAAAGCGTACGATTTCGTGATCGAGTCGATGGAGTTGGAGGCCGGGCCGACTGTGTGGGGTGCTCTGCTG CATGCTTGTTATGTGCATGGGAATGTGGAGATTGGAGAGGTAGCTGCTCAGTGTCTGTTTGAGCTGGAACCTGATAATGAACATAATTTTGAACTTCTGG TGAAGATCTATAGCGATGGCGGAAGGGTGGAGGATGCTGAGAGGGTTAGGAGGATGATGGTTGATAGAGGACTGTAA
AA sequence Show only first row Show all	>Lus10031714 pacid=23180727 polypeptide=Lus10031714 locus=Lus10031714.g ID=Lus10031714.BGIv1.0 annot-version=v1.0 MWRRISSSTSLIGVSYATSSLREKNPFITFVLGGPGSGKGTQCERIAATFGFTHLSAGDLLRKEILTNSKERAAILNIIKDGKIVPSEVTVKLILKEMES SHSNKFLIDGFPRTEENREAFERIIGLEPNAVLFFDCPEEEMVKRVLNRNQGRVDDNIDTFKKRLKVFEAMSLPVVDHYSKKGKLHKINAVGDVDEIFEQ ARAVFAAPELINQIICFRFLLPAFPSSEMALILPPTTTTTTATISSPGMFLRCAASTRKTRKQKLTRKLEKWQGNTGTSLSFPKSSPTPILINRERIPRT QLEALDKVVEDIETSIQKGIHMDAETFASLLETCYRLGSIEHGFRIHRLLPKPLLRKNFGIGAKLMRLYASSGYLDEAHQVFDEMSRRTESAFAWNSLIA GYAEMGQYEDAMALYFQMEEDGVKPDRFTFPRVLKACAGIGDIQVGEAVHRDVIRFGFGYDSFAMNALVDMYAKCGDIVKARTIFDRIGSKDSISWNSML TAYVRHGLVAEALRIFGRMVSQGVEPDSVTISIIVANASCFELNFQLHGWVIKRGMMQWEVSIVNSLMVFYATKGELNLARQLFDEMPDRDIVSWNSIIS AHKNRRESLSYFKKMEAENVIPDNITFVAILSACAHLRLVEEGERVFDLLRRKYKMRPIMEHYACMVNLYGRAGLVKKAYDFVIESMELEAGPTVWGALL HACYVHGNVEIGEVAAQCLFELEPDNEHNFELLVKIYSDGGRVEDAERVRRMMVDRGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	0	1
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	1.0	0.9018
AT5G04000			unknown protein		Lus10018038 [exp]	1.7	0.8625
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	2.0	0.8824
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	4.5	0.8624
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	4.5	0.8340
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	6.6	0.8154
AT2G39170			unknown protein		Lus10040608 [exp]	8.0	0.8218
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	8.1	0.8282
AT3G60480			unknown protein		Lus10034728 [exp]	8.7	0.7908
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	12.1	0.7959

Compare expression of checked genes

Lus10031714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.