Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51540 1017 / 0 Zincin-like metalloproteases family protein (.1) AT1G67690 188 / 1e-50 Zincin-like metalloproteases family protein (.1) AT5G10540 170 / 2e-44 Zincin-like metalloproteases family protein (.1) AT5G65620 169 / 6e-44 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031136 [exp] 1301 / 0 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 188 / 3e-50 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 177 / 1e-46 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 171 / 3e-44 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 121 / 4e-28 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129300 [exp] 1092 / 0 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 194 / 9e-53 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 177 / 8e-47 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 172 / 8e-45 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10031715 pacid=23180660 polypeptide=Lus10031715 locus=Lus10031715.g ID=Lus10031715.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGATTCGAAGAACAACGGTGAGGCTGCTCCGGCACCAATTCAGCTTAAAATCAATATGTTCGTCGTATCTTCTGCCGCGTGGTCGCCGTT TCAGCAGTCGAGTCTCGCCGCGGAGCGTAGAAGCTACCGCCGGTCTCTACGGGTTCCACCATTTGAAGACCGCAGCAGGATTCTCGCGGTTCGTCGATGA CGCCATTCAAAGGTCAACGGAGCTGGTTGAGTATATTTCCACCATGCCTTCATCGGCTGAGATTATCAGAGCCATGGACGAGATTTCAGATGCTGTGTGT TCTGTTGTGGACTCTGCTGAACTTTGTCGAAATACTCATCCAGACAGGGAGTTTGTTGAGGAGGCTAGCAATGCAGCAATGAGGCTTAATGAATATCTAC ATTACCTTAATACGAATCATACCCTATACGCTGCGGTGAAAAGGGCAGAGCAAGATGGTCATTCACTTTCAGCAGAAGCTCACAGAGCTGCTCGCCACCT AAGGATTGACTTTGAAAAGGGTGGAATCCATCTTCCACCTGATAAGTTGGACAGGTTAAATCAGCTGAATATAGAAATTTTCAAGCTCTCGCGAGAGTTT GGTGAAAACATAAGTTCTGATCCTGGCCATGTAGAAATTTTCCCTGCATCTCGCATCCCCAGACAGATACGCCATCTTCTTACTCCCATCCATCGTCTCA AGTCTGGTACTTCTAGTGGATCACTAAGTCCGTGGAATACCATGACAGAAAAAGGATACCGTATATCGACTGAGCCACGCACTCTAGCTTCTGTTATGCA GTGGACTGCTGATGAGGAGGTTAGGAGAACAGCCTTTATCAAGGGAAACTCTGTCCCTCAGGCAAACCTTGGAGTTCTTGAAAAGCTTATTGCTGCTCGA CACGAGCTGTCTCAGATAATGGACTGTAGATCATATGCTGATTTTGTGGTCAAACAAAACTTGGCTTCTTCCCCTGAAGTTGTCACATCCTTCCTCAGTG ATATGGGTACCACCGTTCGACCAAAGGCCAACGAGGAGTTTGACAAAATTAAGAACTTCAAGCAAGAAAAATGCGGTGGAGATTCTACTGATTTGTACCC ATGGGACGAGGCATATTATACCGGAATGATGAAGTCTTCAATGCAGGATTTGGATTCGTCAATAGTATCTTCATATTTCCCATTGCCACATTGTATTGAA GGTCTAAAAATGCTGGTGAAGTCGTTATTTGGTGCAACATTTCATGAAGTCTCTATGGCTGTAGGAGAATCGTGGCATCCAGATGTCCTTAAAATGATTC TCCACCATCCCGACGAGGGTGACTTGGGGACTCTCTACCTTGATCTGTACCAAAGGAAGGGCAAATATCCAGGTTGTGCCAATTTTTCAATTAAAGGAGG ACGGCGCATCTCTGAAACCGAATACCAGCTGCCTGTAGTGGCCCTTGTCTGCAACTTTTCGGGTTCACATGATTCATCAAGTGTGAGACTTAATCACTGG GAACTAGAAACTCTGTTTCATGAGTTCGGCCATGCAATTCATTCCCTGCTTTCGAGAACGGATTATCAACACTTTGCTGGTACAAGAGTGGTCCTTGACT TTGCTGAGACACCGTCAAACCTCTTTGAGTACTACGCGTGGGACTACCGTGTCTTGAAGACATTTGCGAAGCACTACGCCACTGGAGAAGTTATTCCCGA GAAACTAGTGGAGGCATTACTAGGAGCCAGAGATATGTTTGCTGCTACTGAACTGCAACGCCAGGTTTTCTATTCGCTGGTTGACCAAACTCTTTTTGGA GAGCAACCTACCCAGATCCGTGACACGAGCTCGATCGTAGCAGACCTCAAGAGAGAGTTTACCAGCTGGGAGCATGTTGATGGTACACATTGGGAAGCCA GATTCAGCCATCTCTTAAACTACGGTGCAGGTTATTACAGCTACTTGTACGCAAGATGCATAGCAGCAACCATATGGAAAAAGCTATGCAAAGGGGATCC ACTGTCACTGGACACAGGCACCGCGCTCCGAACCAAGCTGTTGCAGCACGGCGGAGCAAAGGAGCCGGCTGAAATGCTGCAGGATCTCACCGGAGACGGG ATTCTTAAGCACTGCAACGGAGGGATGGTTCCTGACACCACAAGTTTCCTGGAAGAATTTAAGCTGGTGGTGGATAGATACCCCTGA
AA sequence Show only first row Show all	>Lus10031715 pacid=23180660 polypeptide=Lus10031715 locus=Lus10031715.g ID=Lus10031715.BGIv1.0 annot-version=v1.0 MSSVIRRTTVRLLRHQFSLKSICSSYLLPRGRRFSSRVSPRSVEATAGLYGFHHLKTAAGFSRFVDDAIQRSTELVEYISTMPSSAEIIRAMDEISDAVC SVVDSAELCRNTHPDREFVEEASNAAMRLNEYLHYLNTNHTLYAAVKRAEQDGHSLSAEAHRAARHLRIDFEKGGIHLPPDKLDRLNQLNIEIFKLSREF GENISSDPGHVEIFPASRIPRQIRHLLTPIHRLKSGTSSGSLSPWNTMTEKGYRISTEPRTLASVMQWTADEEVRRTAFIKGNSVPQANLGVLEKLIAAR HELSQIMDCRSYADFVVKQNLASSPEVVTSFLSDMGTTVRPKANEEFDKIKNFKQEKCGGDSTDLYPWDEAYYTGMMKSSMQDLDSSIVSSYFPLPHCIE GLKMLVKSLFGATFHEVSMAVGESWHPDVLKMILHHPDEGDLGTLYLDLYQRKGKYPGCANFSIKGGRRISETEYQLPVVALVCNFSGSHDSSSVRLNHW ELETLFHEFGHAIHSLLSRTDYQHFAGTRVVLDFAETPSNLFEYYAWDYRVLKTFAKHYATGEVIPEKLVEALLGARDMFAATELQRQVFYSLVDQTLFG EQPTQIRDTSSIVADLKREFTSWEHVDGTHWEARFSHLLNYGAGYYSYLYARCIAATIWKKLCKGDPLSLDTGTALRTKLLQHGGAKEPAEMLQDLTGDG ILKHCNGGMVPDTTSFLEEFKLVVDRYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	0	1
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	2.2	0.8400
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	2.8	0.8104
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	3.7	0.8284
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	4.0	0.8254
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	4.5	0.8047
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	5.5	0.8120
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	5.5	0.8266
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	7.3	0.8086
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	8.8	0.7956
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	8.9	0.8123

Compare expression of checked genes

Lus10031715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.