Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25290 654 / 0 DNA photolyases;DNA photolyases (.1) AT4G36530 106 / 6e-25 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 86 / 8e-18 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 81 / 5e-16 alpha/beta-Hydrolases superfamily protein (.1) AT5G13800 71 / 1e-12 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT2G47590 58 / 1e-08 PHR2 photolyase/blue-light receptor 2 (.1) AT5G24850 56 / 6e-08 CRY3 cryptochrome 3 (.1) AT3G15620 45 / 0.0001 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT4G33180 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031137 [exp] 1118 / 0 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10028315 [exp] 117 / 2e-28 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 102 / 3e-23 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 88 / 2e-18 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10005320 [exp] 81 / 7e-16 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10019755 [exp] 77 / 2e-14 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10025172 [exp] 76 / 7e-14 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10020878 [exp] 61 / 1e-09 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10007880 [exp] 60 / 4e-09 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129500 [exp] 760 / 0 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.005G121000 [exp] 114 / 2e-27 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 91 / 3e-19 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G054800 [exp] 77 / 1e-14 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.003G219700 [exp] 73 / 2e-13 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G277500 [exp] 68 / 1e-11 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.002G204000 [exp] 62 / 8e-10 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 62 / 9e-10 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.010G158800 [exp] 49 / 7e-06 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10031716 pacid=23180580 polypeptide=Lus10031716 locus=Lus10031716.g ID=Lus10031716.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTCTCCTCTCCTCCTCCTCCTCCCGCTTCCTCTTCCTCTCGCCGGCCAACACTCCTCCCTCCTTCCGGCATCGAAACTCGTACCGCCGCC GCCGCTGCTCATCCATTTCTGCTTCCACACCAGGACGGCGCAATGGCGACTTGACTGCGGCGGCGATCGTCTGGTTCAAGCAGGATCTCCGTGTCGACGA TCACCCTGGCATCGTAGATGCCTCCGGTTTCCAAGCCGTCATCCCTGTCTACGTGTTCGATCACCGGATTCTCTATCGCTATTCTGATGAGATGCTTGAG CTGGTTCTCTTCGCGCTAGATGATTTAAAGAGGTCTCTGATTCGGATGGGATCCAATTTGATGATCAGGTTTGGTGATGCTGAGAGTATCATCAGGAGCT TGGCGCTAGAGGTGAGATCTTCTAACGTGATTGTTGAAGAAGAAGTTGAGTATCACTTGCTCGAGATGGTAGAAACCGTGGAGAAAACTTTGACAGAGAT GCCACTTTCAGCTGGAAACTCTAAGATCATGCGGTGGCGAACTCCGTTTTATGATTTTAAGAACTTGACAGGATTGCCTGCTAACTATGAAGAGTTCAAG AAACTGAAGTTGCCCATTACTTTACCGGTTCCACCGCCTCCAAATTTACCTGGTTCAGAGTTCGAACTGGATTGGGGTACATTGCCAACAATGGATCAGT TGAAGGGGTATATGGATCAGAATCCTTCCAAACTGAAAGAGACTTGGAGTTCAGTGAAGGAGATCTCGACCGAATCTATACTGCAGAGAAGAAATAAAGT GTCGAAGGCCGGGGACAGTTTGAATCGCAGTCTTACAACGAGAAACAAACTTAAGAATACTGTTTTCATTACGGAAGAACAGAACTTTGTTGGAGGTGGG AGCAGCAGTGTACTTAACGGGTTGGCTGCTTACTTGAGATACTTGGAGGGAACTGCACGGGATGATTGGCAAGAGGTACATGCGAAGTTACGAAGTGCTG AGACCAGGGACGGAGCTTCGTTTTCAGCACTTTTTGGACCAGCTCTTTCTCTTGGCATTATATCAAGAAGGAAGGTATATACAGAAGCAATAAGATACGA TCGAGAAAGAAATGGTGGTTTTCAATCACCTTTTGGATATTCAACAGTCACAATTGCTGCAGCTGTTAATGCTGTGAGCTCAATGGAGTGGTATTGGCTT ATGGCTCTCAAAGGACAACTTAATGAAGAAGGATTGAATTCTACTCGGACATGGAGATGGAATGGCTACTTAGTTCAGGCAATAACGCTTCTCGGTTTCG GAAAATCTGAGAAGCCGGGTGTCGTGTATACCGAACTTCTGTGGGCTGAACTGTTGAAGGATTTCATCATCGAAGTCATTCGCGAACCGGTGCACCTAGT GGGCAACTCGATCGGCGGCTATGTCGCGTCTATTGCTACATGTTTCTGGCCTTCGTTGGTACGGTCTATCGTCCTTATAAACAGTGCTGGGAATATCGTG CCTGGCTATCGTTATCTCCCTTTTACCAAAGAAAGGAGGATTGCTGGAGCAGCATGGCTCGGAGCACGCGCCATTTTGTTGTACTTGCGGTCGAACATCA GAAGCATAGTGCGGAATTGCTACCCAACCAGACCGGATCGAGCCGATGATTGGCTTATCAACGAAATGCTACGTGCCTCGTGCGATCCTGGAGTAGAAGA GGTCCTAGAAAGTGTCTTCAGCTTCAACCTATCCCTCCCTCTCAACTATCTACTCGAAGGCCGAAAGAAACAGGTTCTTATCATACAGGGAATGAAGGAT CCAATCATGGACTCCAAATCCAAAGTGGCTATGATGAAGGAACATTGTCCTGGATTTGTGATCAAGCAATTGGACGCTGGACATTGCCCTCACGACGAGC TGCCAGACGAAGTGAATTCCATCGTTTGCGAATGGACAGCTTTGATAGAGAGTCAAAATCTTGCTCCAAGCTTTTCGTAG
AA sequence Show only first row Show all	>Lus10031716 pacid=23180580 polypeptide=Lus10031716 locus=Lus10031716.g ID=Lus10031716.BGIv1.0 annot-version=v1.0 MAAALLSSSSSRFLFLSPANTPPSFRHRNSYRRRRCSSISASTPGRRNGDLTAAAIVWFKQDLRVDDHPGIVDASGFQAVIPVYVFDHRILYRYSDEMLE LVLFALDDLKRSLIRMGSNLMIRFGDAESIIRSLALEVRSSNVIVEEEVEYHLLEMVETVEKTLTEMPLSAGNSKIMRWRTPFYDFKNLTGLPANYEEFK KLKLPITLPVPPPPNLPGSEFELDWGTLPTMDQLKGYMDQNPSKLKETWSSVKEISTESILQRRNKVSKAGDSLNRSLTTRNKLKNTVFITEEQNFVGGG SSSVLNGLAAYLRYLEGTARDDWQEVHAKLRSAETRDGASFSALFGPALSLGIISRRKVYTEAIRYDRERNGGFQSPFGYSTVTIAAAVNAVSSMEWYWL MALKGQLNEEGLNSTRTWRWNGYLVQAITLLGFGKSEKPGVVYTELLWAELLKDFIIEVIREPVHLVGNSIGGYVASIATCFWPSLVRSIVLINSAGNIV PGYRYLPFTKERRIAGAAWLGARAILLYLRSNIRSIVRNCYPTRPDRADDWLINEMLRASCDPGVEEVLESVFSFNLSLPLNYLLEGRKKQVLIIQGMKD PIMDSKSKVAMMKEHCPGFVIKQLDAGHCPHDELPDEVNSIVCEWTALIESQNLAPSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	0	1
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	1.0	0.9330
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	3.5	0.9030
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	3.7	0.9327
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	6.8	0.8467
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	7.9	0.8847
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	8.7	0.8647
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	8.9	0.8814
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	11.2	0.8885
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	11.5	0.8475
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	12.3	0.8948

Compare expression of checked genes

Lus10031716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.