Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62360 140 / 7e-42 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 108 / 2e-29 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 109 / 7e-29 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 105 / 3e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 102 / 7e-27 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 99 / 2e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 94 / 1e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 94 / 1e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 87 / 6e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 86 / 1e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031138 [exp] 258 / 6e-88 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 152 / 3e-46 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 150 / 9e-46 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 118 / 3e-33 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 113 / 2e-31 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 113 / 4e-31 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 112 / 6e-31 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 110 / 6e-30 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 104 / 1e-27 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128200 [exp] 157 / 2e-48 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 157 / 2e-48 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 150 / 7e-46 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 120 / 6e-34 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 117 / 4e-33 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 108 / 2e-29 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 108 / 3e-29 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 106 / 1e-28 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.010G109300 [exp] 104 / 1e-27 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 99 / 1e-25 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031717 pacid=23180803 polypeptide=Lus10031717 locus=Lus10031717.g ID=Lus10031717.BGIv1.0 annot-version=v1.0 ATGTCGGCGCCGGCATCATCCTCCGCCTACGTTCTCCTCGCCGTCACTTTCTTACTAGCCTCCACGTCATCAGCCTCCAGACCCATTTCCTCCTCCGCCT CCGCCGGCGCCACAAACACAGAGTTCATCCGTACGTCATGCACCGCCACGTCATACCCGAAACTATGCTACACCTCCCTATCAACCCACGCCACCAAGAT CCAGACCAGCCCCAAGCTCCTGGCCTCCGCCGCCCTCCACGTGGCCCTGTCATCGGCCAAGTCAGCCTCGGCTGAGATGGCCGAGATCTCCCGCGGCCAT CTTCACGGCCCCCGCGAGGTGGGGGCCATGCAGGACTGCGTGGAGGAGCTTGAAGACTCTGTTGACCAAATTCACGAATCGGTCAACAGAATGGAGGGCA AGGAAACAGACAATAATACTAAGAACAAGGGTGCGGATTTCGAGAGGATGATTAACGACGTGGAGACTTGGGTCAGCGCGGCGTTGACCGACCAAGGCAC GTGCAGCGACGGGTTCGGAGAGATGGACGGAGAGTTGAGGAAGGTTGTGAAAGGGAAGGTTGTGAAAGTGGCTAAGCTTACTAGTAATGCTTTGGATCTG ATTAGCAACTATGCTTCTCTACATTGA
AA sequence Show only first row Show all	>Lus10031717 pacid=23180803 polypeptide=Lus10031717 locus=Lus10031717.g ID=Lus10031717.BGIv1.0 annot-version=v1.0 MSAPASSSAYVLLAVTFLLASTSSASRPISSSASAGATNTEFIRTSCTATSYPKLCYTSLSTHATKIQTSPKLLASAALHVALSSAKSASAEMAEISRGH LHGPREVGAMQDCVEELEDSVDQIHESVNRMEGKETDNNTKNKGADFERMINDVETWVSAALTDQGTCSDGFGEMDGELRKVVKGKVVKVAKLTSNALDL ISNYASLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	0	1
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	1.4	0.9227
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	2.4	0.9194
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	4.9	0.9067
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	5.7	0.8644
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	5.9	0.8833
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	6.0	0.8770
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	6.0	0.8669
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	6.0	0.8862
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	6.3	0.8644
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	7.0	0.8683

Compare expression of checked genes

Lus10031717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.