Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 568 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 567 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 567 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 488 / 6e-169 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 399 / 1e-134 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G23200 396 / 3e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 375 / 2e-124 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 375 / 3e-124 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 368 / 9e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 363 / 4e-119 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031140 [exp] 1032 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 588 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 583 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 582 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 575 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 563 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038919 [exp] 517 / 2e-178 AT5G51490 462 / 6e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 488 / 3e-168 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 464 / 4e-160 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 628 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 610 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 539 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 521 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 498 / 1e-172 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 497 / 2e-172 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 449 / 2e-153 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 449 / 3e-153 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 392 / 4e-130 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 390 / 8e-130 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031719 pacid=23180664 polypeptide=Lus10031719 locus=Lus10031719.g ID=Lus10031719.BGIv1.0 annot-version=v1.0 ATGATGAGACCCATAATTAGGCTACTCACAATCCTCTACTTCTTCTTATTCTCTTTCCCAATTGCCTCATTGGCTCATGGTTACACCAACCACTCGAGTC TACTCCGATGGTGCAAGGGTACCCCACACCCGAGCACGTGTAACCACTACGCGAGCCGGGTCAGCTGTCCCCACCCGAACGGGTCCACCAAGAGGTCGGA ATTCAGAATCGTCGTGGTAGAAGCAGCCCTCGAGAGGGCGATTGATGTGGAGCGCAAGGTCTACGGACTGCGGTCCAAGGCCCAAACCCACCAGCAGAGG GCCGCGTGGATCGACTGCATGAGGCTCCACCTCAGCACGGTCCGCCACCTCAACCATACCTTGCAGGGTCTCACGTCGACACCCAAGTCGTGCACGAACT TGGATGCCCAGACCTGGTTGAGCAGCTCCCTGACCAACCTCGACACGTGCCAGTCAGGGTTTATGGACCTGAACGTGACCGAGTTTTTGAACCCGATCAT GTACGGCAGCAATCTATCGGAACTGATCAGCAATACTCTTGCGGTCAACCATAGGTTGTTGACTGCGAGCGGAGGTGACGTGGATGATGATGATGATCAG GAGGAGGCCACATTTCCGAAGTGGTTTGGAAACCACGAGGGGAGGTTGTTGCAAGGCCGGCCCGGGTTGGGTACTAGTGACCTCAAGGGGAATTTGGCTG TGGCTTTGGACGGGTCGGGTAATTTCAAAACGGTTCAAGCTGCAATTGATTTTGCCAAGAGGAGGAAGTATAGAACTAGGTTTGTGATTAGAGTGAAGGC TGGTGTTTATAAGGAGAATATTGAGGTGGATTATGATAATAGCTATATTTGGTTGATCGGCGACGGAATCAGAAAGACTATTATCACCGGCGACCGTAGC GTTGGGAGTGGATACACCACGTTCAGTTCGGCCACCCCCGGAATAGATGGACCCCGATTTGTGGCACGTGACATAACATTTCGAAACACTGCCGGCCCCC GAAACGGCCAAGCAGTCGCCCTCCGGTCAACCTCCGACCTGGCCGTCTTCTACCGGTGCTCCTTTGAAGGCTACCAAGACACCCTCTTCATCCACTCCCA ACGGCAGTTCTTCCGCGAGTGCTACATCTCCGGCACCATCGACTTCATCTTTGGCAATGCCGCTGCCGTCTTCCAAGGTTGTGTAATCGCCGCCCGACGC CCCCTTCCTGGCCAGGCCAACATGATCACCGCCCAGGCCCGGAACGACCCATTCCAAAACACGGGGATCTCGATCCACAACTCGAAAATTGTGCCGGCGC CAGACCTACTGCCGGTGGTCCGGGCGTTCAAGACTTACTTGGGCCGGCCCTGGTTTCTCTACTCGAGGACGGTTGTTATCAAGACCTATATGGACCAGTT CATTTATCCGGCTGGTTGGTCCACGTGGCTAGACTCGAATGCTGCCCTTAGTACTTTGTACTATGCGGAGTACAAGAATTTTGGACCGGGTGGTTCGACC AGGTACAGGGTCCATTGGCCCGGGTTTCATGCTTTGAAGAGTGACGCGGAGGCTTCCGGGTTTACGGTGGACGGGCTTCTCGCCGGGAAGTCGTGGTTGC CGTCGACCGGCGTTCCGTTTGTGTCTGGTCTTTGA
AA sequence Show only first row Show all	>Lus10031719 pacid=23180664 polypeptide=Lus10031719 locus=Lus10031719.g ID=Lus10031719.BGIv1.0 annot-version=v1.0 MMRPIIRLLTILYFFLFSFPIASLAHGYTNHSSLLRWCKGTPHPSTCNHYASRVSCPHPNGSTKRSEFRIVVVEAALERAIDVERKVYGLRSKAQTHQQR AAWIDCMRLHLSTVRHLNHTLQGLTSTPKSCTNLDAQTWLSSSLTNLDTCQSGFMDLNVTEFLNPIMYGSNLSELISNTLAVNHRLLTASGGDVDDDDDQ EEATFPKWFGNHEGRLLQGRPGLGTSDLKGNLAVALDGSGNFKTVQAAIDFAKRRKYRTRFVIRVKAGVYKENIEVDYDNSYIWLIGDGIRKTIITGDRS VGSGYTTFSSATPGIDGPRFVARDITFRNTAGPRNGQAVALRSTSDLAVFYRCSFEGYQDTLFIHSQRQFFRECYISGTIDFIFGNAAAVFQGCVIAARR PLPGQANMITAQARNDPFQNTGISIHNSKIVPAPDLLPVVRAFKTYLGRPWFLYSRTVVIKTYMDQFIYPAGWSTWLDSNAALSTLYYAEYKNFGPGGST RYRVHWPGFHALKSDAEASGFTVDGLLAGKSWLPSTGVPFVSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	0	1
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	1.0	0.9674
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	6.2	0.9496
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	6.9	0.9435
					Lus10026740 [exp]	8.0	0.9527
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	8.5	0.9427
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	10.0	0.9469
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10037283 [exp]	10.5	0.9315
AT5G42740			Sugar isomerase (SIS) family p...		Lus10010808 [exp]	10.5	0.9152
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	11.6	0.9462
					Lus10003802 [exp]	13.2	0.9442

Compare expression of checked genes

Lus10031719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.