Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 511 / 2e-177 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 505 / 3e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 409 / 1e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 346 / 1e-112 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 343 / 1e-112 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT3G60730 335 / 7e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 333 / 5e-107 ATPME3 pectin methylesterase 3 (.1) AT5G53370 327 / 8e-105 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G53830 326 / 1e-104 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031141 [exp] 1020 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 704 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 665 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 655 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 562 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 545 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 437 / 3e-148 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 425 / 1e-144 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 409 / 4e-137 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 557 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 525 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 487 / 3e-168 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 481 / 1e-165 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 440 / 5e-150 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 434 / 1e-147 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 405 / 4e-136 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 391 / 9e-131 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 343 / 4e-111 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.013G013200 [exp] 338 / 6e-110 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031720 pacid=23180699 polypeptide=Lus10031720 locus=Lus10031720.g ID=Lus10031720.BGIv1.0 annot-version=v1.0 ATGGCGTCTTTGGTCACCTTTACCCTCCTCTCATTTACAATCTCTTGTTACATGATCTTCTGGTCTCCGATTGTATCCTCGGAGGTAGACGCGGTTACCT TGTGGTGCAAGGAAACTCCGAACGAAGAAGCATGCACCCGCTATGTGTCGGCCCAAACCCACCTGAATGTTGAAAGCGGGATAGTAGAACATAAGTCGGC TTTTCGTGAGCTGGCTATCGAGGCGGCCTTGAAAAAAGCACTCGACGTGGAAAGTCAACTGTACAGGCAGAAGTCAAAGTGTAGTAACCCGCAACAGTTA ACGGTGTGGAGCGATTGCACGAAGCTTCACGCCAGCACCATCAGGCACCTCAACAGCACATTGCGGTGCCTAAAGGACACCACCCCTACGGCAATCAGAT GCACAGACTTCGATGCGCAGACGTGGCTCAGCAGCGCGCTAACCAACGTAGAGACCTGCAGGGCGGGGTCCACGGACCTGAACATGCCCAACTTCATCGC CCCGATGATCAAGTCCAGCAATCTGTCGGAGCTGATCACCAACACGCTGGCGGTCAACGGGGCGATGTTGACCGATGAAGAGAAGGAAAATGCCCATGCA GACGACCAGCTATTACCGGTCTCGACGAGAAGGGTGACAGCCAAGTGGAGGAGGGACGACGAGAGGAGGCTTCTAGAAGGCTCGATCTCCTCGTTGATTG TGAAGTCGGATACCGTGGTGGCTAAGGACGGTTCGGGGAAGTTCAGGACGGTCCAGGCCGCCATCGATTTGGCTGCAAAGAGAGATGACTGTAGGGAGAA GTTCATCATACGAGTGAAGAAGGGAGTTTACGAGGAGACCATTGAGGTTTTGGATAGTAATCATAATGTCTGGCTCGTCGGAGATGGTATCGGAGTTACC ATAATTACCGGCAACCGTAGCGTTGGGAGTGGGAATTACACGACTTTCAGTTCCGCCACCGCCGGGATCGACGGCGCAAGGTTCGTAGCCAGAGGAATCA CGTTCAGGAACACTGCCGGCCCACAAAAGCGGCAGGCGGTGGCCCTCCGATCAGCATCCGACCTCGCCGTGTTCTACCAATGCAGCTTCCAGGGCTACCA GGACACCCTCTTCATCCAAACCCAGCGCCAATTCTTCCGCGAATGCCACCTCTCCGGCACGGTGGACTTTATATTCGGCAACGCCGCCGCCGTCTTCCAA AACTGCTTGATCTTCGTCCGGCGGCCGATGGACGGCCAGATCAACACAATCACCGCCCAGGGAAGGCAGAACTCGTTTGAGCACACCGGATTCTCCATCC ACGGCTCCAAGATCCTCCCATCACCGGAGCTGAAACCCGTCGCCGACAAGTTCCCGACGTACCTCGGCCGGCCGTGGATGCGGTATTCAAGGACAGTGGT CATGAAGAGCTACATGGACGGTATCGTCTCGCCGGAGGGCTGGTCGAAATGGGGAGGGACTGATTTCGCTCTGAATAGTCTCTACTTCGGAGAGTACAAC AACACCGGCGCCGGCGCTTGTACGGATTACAGGGTAAAATGGAGAGGTTTCCACGTCATCAATGACGACGTCACGGCGAAGCAGTTCACCGTTAACGGGC TTTACGCTGGCCGTTCGTGGCTTCCGTCCACAGGGGTTCCGTTTAGTGGCGATCTTTAG
AA sequence Show only first row Show all	>Lus10031720 pacid=23180699 polypeptide=Lus10031720 locus=Lus10031720.g ID=Lus10031720.BGIv1.0 annot-version=v1.0 MASLVTFTLLSFTISCYMIFWSPIVSSEVDAVTLWCKETPNEEACTRYVSAQTHLNVESGIVEHKSAFRELAIEAALKKALDVESQLYRQKSKCSNPQQL TVWSDCTKLHASTIRHLNSTLRCLKDTTPTAIRCTDFDAQTWLSSALTNVETCRAGSTDLNMPNFIAPMIKSSNLSELITNTLAVNGAMLTDEEKENAHA DDQLLPVSTRRVTAKWRRDDERRLLEGSISSLIVKSDTVVAKDGSGKFRTVQAAIDLAAKRDDCREKFIIRVKKGVYEETIEVLDSNHNVWLVGDGIGVT IITGNRSVGSGNYTTFSSATAGIDGARFVARGITFRNTAGPQKRQAVALRSASDLAVFYQCSFQGYQDTLFIQTQRQFFRECHLSGTVDFIFGNAAAVFQ NCLIFVRRPMDGQINTITAQGRQNSFEHTGFSIHGSKILPSPELKPVADKFPTYLGRPWMRYSRTVVMKSYMDGIVSPEGWSKWGGTDFALNSLYFGEYN NTGAGACTDYRVKWRGFHVINDDVTAKQFTVNGLYAGRSWLPSTGVPFSGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10019707 [exp]	3.2	0.9277
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	6.3	0.9375
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	7.7	0.9248
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	11.2	0.9180
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10042940 [exp]	11.7	0.8704
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	12.6	0.9289
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	12.8	0.9108
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	13.1	0.9327
AT1G06980			unknown protein		Lus10025927 [exp]	13.9	0.8876
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	14.1	0.9083

Compare expression of checked genes

Lus10031720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.