Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51460 511 / 0 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 444 / 1e-156 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 428 / 3e-150 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 374 / 8e-129 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 359 / 1e-123 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 359 / 3e-123 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G65140 358 / 6e-123 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 357 / 9e-123 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G78090 354 / 4e-121 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT1G22210 322 / 2e-109 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031146 [exp] 694 / 0 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 577 / 0 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 568 / 0 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 479 / 5e-170 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 474 / 6e-168 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019666 [exp] 373 / 5e-129 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 320 / 6e-108 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 300 / 4e-100 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 297 / 6e-99 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G126900 [exp] 533 / 0 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.012G126100 [exp] 522 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 461 / 5e-163 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 450 / 9e-159 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G090900 [exp] 384 / 8e-133 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 377 / 2e-130 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 374 / 8e-129 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 328 / 3e-111 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 315 / 4e-106 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 268 / 2e-88 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10031723 pacid=23180572 polypeptide=Lus10031723 locus=Lus10031723.g ID=Lus10031723.BGIv1.0 annot-version=v1.0 ATGGACCTAAAGCCAGCTCATGCTTCCCCGGTTCTCACTGATTCTGCACCCGTGCCAAAATCGAGACTGCATTCCACGATGTTACCATGCCCTATAGCAA CATTCTTGCCGAATCTGTGTCTGACCGTGCCGAGGAAGAAAACCGGTTTGCTGGACGATGTCCGCTCCAGCAGCTGGCTTGATGCTATGAAAGCATCCTC ACCACCTCCTAAGAGGCTGACCAAAGACCAGAGCAATGAACATACGTTGCCTGATGAAATCTGCTACTTAAACTGGCTGCTTAGATATCCGTCAGCTCTT GCGTCGTTCGAGCAGATCTCAAACTTTGCACACGGGAAAAGGATAGCGTTGTTTCTGGACTACGACGGGACTCTTTCACCGATTGTTGATAACCCCGACT GCGCTTTCATGTCTAACAAAATGCGATCTGCCGTTAAAAAAGTTGCGAAATACTTCCCTACCGCGATCATTAGTGGAAGAAGCCGCGACAAGGTCCACGA GTTTGTTGGTCTTACTGAACTGTACTATGCCGGCAGCCATGGTATGGACATTATGGGTCCTGTTAGAGAAGCTGCATCTGATATTAACTTGTTCCAGCCC GCTAGTGAATTTGTGCCTATGATCGACGAGGTCTTCGATTCCCTACTGGAGAGCACTAGAAACATAGAAGGAGCTAAGGTTGAGAACAATAAGTTCTGCG TCTCTGTGCATTATAGAAACGTGGATGACAAGTATTGGGATATAGTTGCGAGAGTTGTTGAGAAAGTTATCGAAAACTATCCACAACTCCGGTTGACACA CGGGAGGAAGGTTCTCGAGATTCGACCGGTGATCGACTGGGATAAGGGGAAAGCCGTGACCTTTCTTCTCGAATCTCTTGGCCTAAGCAACTGTGACGAT GTTCTGCCGATTTACGTGGGCGATGACCGGACCGATGAGGATGCATTCAAGGTGTTGAGAGATGGGAAATGCGGGTATGGGATATTGGTGTCATCTGTGC CTAAGGAAAGCAACGCATATTACTCTCTCCGAGACCCATCCGAGGTAACGAACTTTTTGGCTCCGATTCTCGAAAGATAG
AA sequence Show only first row Show all	>Lus10031723 pacid=23180572 polypeptide=Lus10031723 locus=Lus10031723.g ID=Lus10031723.BGIv1.0 annot-version=v1.0 MDLKPAHASPVLTDSAPVPKSRLHSTMLPCPIATFLPNLCLTVPRKKTGLLDDVRSSSWLDAMKASSPPPKRLTKDQSNEHTLPDEICYLNWLLRYPSAL ASFEQISNFAHGKRIALFLDYDGTLSPIVDNPDCAFMSNKMRSAVKKVAKYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIMGPVREAASDINLFQP ASEFVPMIDEVFDSLLESTRNIEGAKVENNKFCVSVHYRNVDDKYWDIVARVVEKVIENYPQLRLTHGRKVLEIRPVIDWDKGKAVTFLLESLGLSNCDD VLPIYVGDDRTDEDAFKVLRDGKCGYGILVSSVPKESNAYYSLRDPSEVTNFLAPILER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	1.0	0.9368
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	1.4	0.8905
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	3.2	0.8513
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	3.9	0.8566
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	5.7	0.8209
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	6.2	0.7989
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	6.7	0.8217
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	6.9	0.8500
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	7.2	0.8535
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	11.4	0.8224

Compare expression of checked genes

Lus10031723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.