Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62390 254 / 2e-80 ATBAG7 BCL-2-associated athanogene 7 (.1) AT3G29310 55 / 6e-08 calmodulin-binding protein-related (.1) AT2G46240 47 / 3e-05 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031147 [exp] 640 / 0 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1) Lus10038064 [exp] 71 / 3e-13 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 68 / 4e-12 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126000 [exp] 380 / 7e-130 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.015G126800 [exp] 378 / 4e-129 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.017G091100 [exp] 68 / 4e-12 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.002G166300 [exp] 56 / 4e-08 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031724 pacid=23180811 polypeptide=Lus10031724 locus=Lus10031724.g ID=Lus10031724.BGIv1.0 annot-version=v1.0 ATGAGACGATCAAGCCGAGTCGAGATCTTCGACCCATTCTGCTTCCCGTCTCCTTCCTCCTTATTCCTCAACGAACCCTCCATTTTCCCTTCTCCGGCTG CCTCCTTCATCCATGAAGAACTTCTCTTTCCTCCTACTCCGTCTTTCGAGCTCTTCGAAACGGTGACGGATCTGATCCAGGTGCAGAATACGCCGTCGTA CTGCTCCTACAAACGGATCCAGCACCAGAAGCCGGCTTCCCCGGATTTGTACCTGCAGACGCTCTCCGAGCGAGTGAGCTCACTCGAGTCTAAGTTCGAG CAGCTGCTGGTCAAGAGTAAAAGAGGAGGAGGGGATCGGAAGTACACGTGGACGGCTGAGATCAAGGACCCGGTGGAGAGGAAGTACAAGTGGACGGCGG AGATCAAGGCGGCGGAGGAACAGGAGGAGAAGAAGAAGGTGGTAGTGAAGAAGGCTGCTGCTACGGCTGCGGAAAAGAAGAAGTACAGGTGGACGGCGGA GATCAAGGGGAAAGGAGATGAATGGAAGAAGTACAGCTTCGAAGTATCCAGCGGCGAGGAGAAAAGCGGGAAGTCGGAGAAGAAGAAGGAGGAAGTGAAG AAGTTGAAGAAATCGGAAGAGAAGAAGAAGAAGCCGACCAACAATGTTCGTGTTGTGGAGATTGACGAGCCTGATTCTGATCATGGAGTCATCGTTCTCC GTCAGGCGTTTGCAAAGAGAGCTGGAGCTATGAGGACGCTGAAGGGGAAGAAGAAGGAGCTGTCTCCTCAAGATGCTGCCTTGCTGATCCAGATCACTTT CAGGGCTTATCTCATCAGGAGGTCGCAGGCTCTTCGTGCTCTAAGAGAGCTGGCGATCGCCAAGGCTAAGTTGAAGGAGCTCAGGGCTTTGTTCAACAAC TTCTCTTACCGTCGCCAAGTTTCCAGGGATGCAGTTGAGCGCCAGAGGTTCTCTGAGAAGATCATTGTCCTGCTCCTCACTGTTGATGCCATTGAGGGAG CTGATCTGATGGTACGAGGCTCCAAGAGGTCGATGGTGGACGAACTCGAAGCAATGCTGGAAGTCGTCGACCCACAGCCGGCTCCTGGAGGAGGAGGAGG AGGAGGAGGAGAGAGGTCACTCTCGATGAGAAGGCGAACATTCGACATGCCAGATGGCGAAATCAGGAGGGAGATCGCTGAAGGAGTGGCGCAGGTAGTC CAGATGCTTGAAGAAGAGGAGAACGCCTGA
AA sequence Show only first row Show all	>Lus10031724 pacid=23180811 polypeptide=Lus10031724 locus=Lus10031724.g ID=Lus10031724.BGIv1.0 annot-version=v1.0 MRRSSRVEIFDPFCFPSPSSLFLNEPSIFPSPAASFIHEELLFPPTPSFELFETVTDLIQVQNTPSYCSYKRIQHQKPASPDLYLQTLSERVSSLESKFE QLLVKSKRGGGDRKYTWTAEIKDPVERKYKWTAEIKAAEEQEEKKKVVVKKAAATAAEKKKYRWTAEIKGKGDEWKKYSFEVSSGEEKSGKSEKKKEEVK KLKKSEEKKKKPTNNVRVVEIDEPDSDHGVIVLRQAFAKRAGAMRTLKGKKKELSPQDAALLIQITFRAYLIRRSQALRALRELAIAKAKLKELRALFNN FSYRRQVSRDAVERQRFSEKIIVLLLTVDAIEGADLMVRGSKRSMVDELEAMLEVVDPQPAPGGGGGGGGERSLSMRRRTFDMPDGEIRREIAEGVAQVV QMLEEEENA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031724 [exp]	0	1
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10013760 [exp]	2.0	0.8282
AT2G42910			Phosphoribosyltransferase fami...		Lus10031395 [exp]	6.6	0.7687
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	15.1	0.7636
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10012113 [exp]	29.3	0.7639
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	33.0	0.7081
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	37.8	0.7350
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	41.4	0.7430
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	43.7	0.6984
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	46.9	0.7431
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	47.2	0.6708

Compare expression of checked genes

Lus10031724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.