Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50300 172 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT3G50280 169 / 1e-48 HXXXD-type acyl-transferase family protein (.1) AT5G67150 163 / 3e-46 HXXXD-type acyl-transferase family protein (.1) AT5G38130 156 / 1e-43 HXXXD-type acyl-transferase family protein (.1) AT3G50270 150 / 3e-41 HXXXD-type acyl-transferase family protein (.1) AT5G67160 139 / 2e-37 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1) AT5G42830 139 / 2e-37 HXXXD-type acyl-transferase family protein (.1) AT5G07860 137 / 2e-36 HXXXD-type acyl-transferase family protein (.1) AT5G07870 132 / 2e-34 HXXXD-type acyl-transferase family protein (.1) AT5G01210 129 / 2e-33 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031148 [exp] 608 / 0 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 288 / 8e-94 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 159 / 2e-44 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 133 / 7e-35 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 132 / 1e-34 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 125 / 4e-32 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 120 / 2e-31 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 118 / 2e-29 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 87 / 8e-19 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057200 [exp] 233 / 4e-73 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 231 / 2e-72 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 226 / 2e-70 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 146 / 1e-39 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 142 / 5e-38 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 137 / 3e-36 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 136 / 3e-36 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 136 / 4e-36 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 132 / 1e-34 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 128 / 3e-33 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10031725 pacid=23180752 polypeptide=Lus10031725 locus=Lus10031725.g ID=Lus10031725.BGIv1.0 annot-version=v1.0 ATGGCTTTGAGCTCTCACCCAAACCCAAGAATCCCGGACACCAGAGTTCGAATCCTCTCAACGGAGATAATCCACGCCGAAAACACTCAAACTCCTCTCC AACGGATCCCTCTCACCGCCGGCGACCTCCGCCTCATCCTCGTCGGAACGATCCAAAAGGGACTCCTCTACCGAGACCCGACGGATCATCCCATCTCCCG GCAAACCTTCATCGGAAACATTAAATCCGCCTTCACCAAAGCTCTCGCCCTCCACCACCCCTTCGCCGGCCGATTTACCGCCGACGAACACTCCAACGGA ACCGCCACCGTCTACATCGACTGCAACGACGCCGGATGCCCGTTCCTCCACGCCGTCGCAGACGGCGTCACCATCGACGAAGCTCTGCAACAACCCTTCT CCGTCCCTCCCGCTCCCGTCCTCTGGTCGTTCTTCGCCTACAGCGACGTGAAGAACTACCACGGATTCACGAAGCCGTTGATGTCGATCCAGATCACCGA GCTCGTCGACGGAGTCTTCGTCGGATGGACGATTAACCACGCCGTCGCAGACGGCACCACGCACTGGAACTTCCACCGCATCTGGTCCAACATCTGCCGC GGATCTTGCGATTACTCCCCTCCCGTGTTCACCAGAGAGACGTCGCTCGACGTGATGAATAAAGAAGTCAGAGTCCCCTGGGCGAAAATTAGGGATTTCA ACGAGGACAATCTCGTCACTCCGCAATTAAAGGAAGGCGTATTCCACTTCAGTAAGGCGAAAATCGCCGAATTAAAAGCAAAAGCCAACGCCGAACTAGC CGGATCTCGTCAGATCTCGTCTCTCCAAGTTCTGATCTCTCACCTATGGAGAGCAGTGACGAGGTGCCGTACGGATCCGGATCCGGAATCGGAGACGCGG TTCGTGATCCAGGCGGGGTTCAGGGGCCGGTTCGAGCCCAAGTTCCCGGCTCATTATTTCGGGAACGCGATCGGGGGGAGGACGACCACGATGAAGGTGA AGGATCTGGTGGCGGAAGGGAGTTTGGGGGGGGGGGGGGAAGCCGGTGGCGGTGAGGAGCGGCTGGGCGAATAA
AA sequence Show only first row Show all	>Lus10031725 pacid=23180752 polypeptide=Lus10031725 locus=Lus10031725.g ID=Lus10031725.BGIv1.0 annot-version=v1.0 MALSSHPNPRIPDTRVRILSTEIIHAENTQTPLQRIPLTAGDLRLILVGTIQKGLLYRDPTDHPISRQTFIGNIKSAFTKALALHHPFAGRFTADEHSNG TATVYIDCNDAGCPFLHAVADGVTIDEALQQPFSVPPAPVLWSFFAYSDVKNYHGFTKPLMSIQITELVDGVFVGWTINHAVADGTTHWNFHRIWSNICR GSCDYSPPVFTRETSLDVMNKEVRVPWAKIRDFNEDNLVTPQLKEGVFHFSKAKIAELKAKANAELAGSRQISSLQVLISHLWRAVTRCRTDPDPESETR FVIQAGFRGRFEPKFPAHYFGNAIGGRTTTMKVKDLVAEGSLGGGGEAGGGEERLGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	2.8	0.9193
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	3.2	0.9127
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	3.7	0.9247
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	5.5	0.9199
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	6.2	0.9238
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	7.7	0.9057
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	7.9	0.9029
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017389 [exp]	9.5	0.8886
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	14.1	0.8921
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	18.3	0.8862

Compare expression of checked genes

Lus10031725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.