Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 564 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 560 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 554 / 0 CYP79A2 cytochrome p450 79a2 (.1) AT5G35917 462 / 4e-159 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G58260 455 / 8e-156 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G79370 442 / 2e-150 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16410 411 / 1e-138 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G16400 407 / 4e-137 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT5G07990 245 / 1e-74 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G01280 244 / 5e-74 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031151 [exp] 853 / 0 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 830 / 0 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 784 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 777 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 692 / 0 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023142 [exp] 447 / 3e-156 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 409 / 4e-140 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10031727 [exp] 364 / 4e-122 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10012624 [exp] 259 / 6e-80 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157200 [exp] 592 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.004G055200 [exp] 582 / 0 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 578 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 266 / 3e-82 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.007G084700 [exp] 244 / 3e-74 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 242 / 5e-73 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 239 / 1e-72 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.006G141400 [exp] 240 / 2e-72 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G045800 [exp] 235 / 4e-70 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.018G051300 [exp] 233 / 8e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031726 pacid=23180627 polypeptide=Lus10031726 locus=Lus10031726.g ID=Lus10031726.BGIv1.0 annot-version=v1.0 ATGAAGTCATCTCCGATCAACACTATTACTGCATCCCCCACCGCCGTCATAATCCTCCTCCTTGCCCTTGCAATCATTTCCACCATCACCATTGTGTTGA TCAACTTCAAGAAACGACGACGACCCTCCACGCCGAAAAACGGGCTCCCTCCGAGCCCGCCCTCGTGGCCGGTCATCGGGAACCTTCCGGAGATAACGAG GAAGAAGCCAGCGGCGTTCCGGTGGATTCATCAGGTGATGAAGGAGATGAACACAGACATCTGCCTCATCCGCCTGGCCAGGACCAACATTGTTCCGGTG TTGGACCCGGCCATAGCGAGGGAAATGCTCAAGAAGCATGACGCGGTCTTTGCTGGCCGCCCCTTTTCCGTAGGGAGCCACGCCATAAGCGGTGGAGAAT ATATGACCACTGTGGTGGCTCCCTACGACGACCACTGGCGCAAAATGAGGAAGGTGTTCACGTCCGAAATCCTCTGCCCGGCTCGACACAAGTGGCTCCA TGACATGCGCGTAGAGGAAGCTGACAACTTGGTGTTCTACGTCCATAACCATAGTGGGACTGACAAGACCGTCAACCTTAGGGTTGTCACACGGCATTAT TGTGGCAATGTGATAAGGAAGATGATGTTTAGCAGGAGGTTCTTCGGGGAGCCCACCGCGGATGGTGGGCCCGGTCCCAAAGAGATTGAGCATATTGATG CGGTGTTTGGGGCTTTGAAGTACTTGTATTCGTTTTCCATATCGAATTTCTTGCCTTTTCTGAAAGTGCTGGACCTTGATGGTCAAGGGAAAGTGATTAA GGAGGCTAATAAGACGATTAGGGATTATCAGAATCCGATCATCGACGAGAGGATTCGACAATGGCGGAGTGGAAAGAAGAAGTTGGTGGAGGACCTCACT GATGTTTTCATTACTCTCAAGGATACCGATGGGAAGCCATTGCTCTCTCGCGATGAAATCACCAACCAAGCCGCGGAAATCATGATAGCGACGGTTGATA ATCCATCTAACCTCGTGGAGTGGGCAATGGCAGAGCTGATAAACCAGCCGGAACTCCTAGCCAAGGCCACGGCAGAAATCGACAGAGTGGTTGGAAAAGA CCGTCTAGTCCAAGAATCCGACATCGGAAGCCTCGACTACGTTAAAGCATGTGCTAGGGAATCCTTCCGCTTGCACCCACTGTCGGCTTTCAACGTGCCC CACGTTGCGGCCGAGGACACGGTCGTTGCCGACTACTTTATTCCCAAGGGCAGTCACGCCCTGCTAAGTCGATACGGCCTTGGGCGCAACCCCAACGTCT GGCCCAACCCGCTTAAATTCGACCCTGAACGCCACCTGAATGATGAGGAGGTCGTGCTAACCGAGCACGACCTCAGATTCATCTCTTTCAGCACAGGTCG CAGAGGGTGCGTGGCGCCCCTACTTGGCACGTGCATCACTACCATGCTACTCGCCAGGTTGATCCAATGCTTCTCGTGGGCCCCGCCAGCCGGGACCGAG ATGATCGATTTGAGGGAGGCTGATGATGAGCTGGTCCTTGCGTCTCCACTCATTGCTTCTGCTAGGCCACGCTTGGCTCCACATATGTACGTACCCAGCC GCTCTACCAAATGA
AA sequence Show only first row Show all	>Lus10031726 pacid=23180627 polypeptide=Lus10031726 locus=Lus10031726.g ID=Lus10031726.BGIv1.0 annot-version=v1.0 MKSSPINTITASPTAVIILLLALAIISTITIVLINFKKRRRPSTPKNGLPPSPPSWPVIGNLPEITRKKPAAFRWIHQVMKEMNTDICLIRLARTNIVPV LDPAIAREMLKKHDAVFAGRPFSVGSHAISGGEYMTTVVAPYDDHWRKMRKVFTSEILCPARHKWLHDMRVEEADNLVFYVHNHSGTDKTVNLRVVTRHY CGNVIRKMMFSRRFFGEPTADGGPGPKEIEHIDAVFGALKYLYSFSISNFLPFLKVLDLDGQGKVIKEANKTIRDYQNPIIDERIRQWRSGKKKLVEDLT DVFITLKDTDGKPLLSRDEITNQAAEIMIATVDNPSNLVEWAMAELINQPELLAKATAEIDRVVGKDRLVQESDIGSLDYVKACARESFRLHPLSAFNVP HVAAEDTVVADYFIPKGSHALLSRYGLGRNPNVWPNPLKFDPERHLNDEEVVLTEHDLRFISFSTGRRGCVAPLLGTCITTMLLARLIQCFSWAPPAGTE MIDLREADDELVLASPLIASARPRLAPHMYVPSRSTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	0	1
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	1.0	0.9986
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	2.0	0.9636
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	3.0	0.9223
					Lus10022950 [exp]	3.7	0.8424
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	4.5	0.8477
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	5.2	0.8497
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	5.7	0.9187
					Lus10024757 [exp]	6.5	0.8816
AT1G16290			unknown protein		Lus10037104 [exp]	6.9	0.8469
					Lus10014474 [exp]	7.1	0.8915

Compare expression of checked genes

Lus10031726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.