Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 217 / 2e-65 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 213 / 9e-64 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 211 / 1e-63 CYP79A2 cytochrome p450 79a2 (.1) AT5G35917 206 / 6e-62 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G79370 185 / 2e-53 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G58260 172 / 1e-48 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G16400 168 / 3e-47 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G16410 167 / 8e-47 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT5G35920 148 / 2e-43 CYP79A4P "cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene (.1) AT1G01280 119 / 1e-29 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031151 [exp] 412 / 6e-141 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 364 / 3e-122 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 323 / 2e-106 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 311 / 2e-101 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 310 / 7e-101 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 296 / 2e-96 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 289 / 2e-95 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10023142 [exp] 229 / 8e-73 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023141 [exp] 139 / 2e-39 AT5G05260 101 / 3e-45 cytochrome p450 79a2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055200 [exp] 214 / 1e-64 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157200 [exp] 209 / 2e-62 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 200 / 4e-59 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 115 / 4e-28 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.016G031100 [exp] 108 / 6e-26 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G085000 [exp] 107 / 2e-25 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G045800 [exp] 107 / 3e-25 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.016G031000 [exp] 107 / 3e-25 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.009G069100 [exp] 106 / 4e-25 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 105 / 7e-25 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031727 pacid=23180805 polypeptide=Lus10031727 locus=Lus10031727.g ID=Lus10031727.BGIv1.0 annot-version=v1.0 ATGGCAAATAACCTCCCTCCGAGCCCGCCTTCCTGGCCGATAGTTGGGAACCTCCCGGAGTTTCTGAGGAAGAAGCCGGTGGCGTTCCGGTGGGTGCACC TAGTGATGAAGGAGTTGAATACTGACATATGTCTCATCAACATAGCCGGGACCAACATCATCCCTGTGTCGGACCCTGCCATCGCCAGAGAAATGTTGAA GAAGCAGGACACCATCTTTGCAGGACGCCCTGCCTTCTCTGTGGGGAGCCACGGCATAAGCGGTGGCCACTACATGACCACCGTGGTGGCTCCCTACGAC GATCACTTGGCCAAAATGAGGAAGGTGTTCACCTCCGAGATTGTCTCCCCTGCCCGACAAAAGTGGCTCCACGAAAAGTGCATCGAGGAAGCGGACAACC TGGTGTTCTACGTCAATAACCATAGTGGGGCCGATAAGAGTGTCAACCTTAGGGCTGTCACGCAGCATTACTGCGGTAACGTGATAAGGAAGGTGATGTT CGGTAAGAGGTTTTTCGGGGAGGCCACTGCTGATGGTGGTCCCGGACCGATGGAGATTGACCACGTCGAAGCTGTGTTCGGGGCTTTGAAGTACTTGTAC TCGTTTTCGGTGTCGTATTACTTACCTTTCCTCAGTGGGTTGGACCTTTTAGTTCAGGAATCTGATGTGCCAAGCCTCAACTATGTCAAGGCATGTGCGA GGGAATCGTTCCGGTTGCACCCATTGGCGGCGTTCAATGTCCCCCACGCCGTCGGCTACTTCATCCCCAAGGGCAGTCACGCCCTGTTGAGCCGCTACGG CCTAGGCTGCAACCCTAAGGTGTGGGCCGACCCGCTCAAGTTCGATCCGGAACGCCACCTGCAGAGTGGCGAGGAGGTCGTGCTGACAGAGCACGATCTC AGATTTATTTCTTTCAGCACGGGTAGACGAGGGTGCGTGGGCGCTCTGCTGGGCTCGTCCATCACCAACATGTTGCTAGCGAGGCTGATCCAGTGCTTCC CGTGGGCCCTCCCCGGCGTAGTTGAGAAGATCGAATTGAGGGAAGCCGAGGATGAGTTGCTCCTTGCGTCCCCGCTTATCGCTTCCGCTACGCCGCGTTT GGCACCCCACTTGTACCCTGCCTTAGCCAAATGA
AA sequence Show only first row Show all	>Lus10031727 pacid=23180805 polypeptide=Lus10031727 locus=Lus10031727.g ID=Lus10031727.BGIv1.0 annot-version=v1.0 MANNLPPSPPSWPIVGNLPEFLRKKPVAFRWVHLVMKELNTDICLINIAGTNIIPVSDPAIAREMLKKQDTIFAGRPAFSVGSHGISGGHYMTTVVAPYD DHLAKMRKVFTSEIVSPARQKWLHEKCIEEADNLVFYVNNHSGADKSVNLRAVTQHYCGNVIRKVMFGKRFFGEATADGGPGPMEIDHVEAVFGALKYLY SFSVSYYLPFLSGLDLLVQESDVPSLNYVKACARESFRLHPLAAFNVPHAVGYFIPKGSHALLSRYGLGCNPKVWADPLKFDPERHLQSGEEVVLTEHDL RFISFSTGRRGCVGALLGSSITNMLLARLIQCFPWALPGVVEKIELREAEDELLLASPLIASATPRLAPHLYPALAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35917		CYP79A3P	"cytochrome P450, family 79, s...		Lus10031727 [exp]	0	1
					Lus10013299 [exp]	16.2	0.4947
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	18.7	0.4614
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	33.9	0.4530
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	35.8	0.4530
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	37.5	0.4530
					Lus10033096 [exp]	39.2	0.4530
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	40.6	0.4470
AT3G44150			unknown protein		Lus10021005 [exp]	43.1	0.4438
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	50.0	0.4409
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	50.6	0.4400

Compare expression of checked genes

Lus10031727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.