Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25200 176 / 5e-54 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 164 / 3e-49 HSP20-like chaperones superfamily protein (.1) AT4G27670 84 / 6e-19 HSP21 heat shock protein 21 (.1) AT1G07400 54 / 7e-09 HSP20-like chaperones superfamily protein (.1) AT1G52560 54 / 2e-08 HSP20-like chaperones superfamily protein (.1.2) AT1G53540 53 / 2e-08 HSP20-like chaperones superfamily protein (.1) AT1G59860 52 / 7e-08 HSP20-like chaperones superfamily protein (.1) AT5G37670 51 / 7e-08 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT4G10250 40 / 0.0006 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT3G46230 40 / 0.001 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031154 [exp] 311 / 5e-107 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10028937 [exp] 84 / 8e-18 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10006444 [exp] 58 / 1e-09 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10011385 [exp] 55 / 1e-08 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10023653 [exp] 54 / 5e-08 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10026262 [exp] 52 / 1e-07 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 50 / 5e-07 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10024225 [exp] 50 / 6e-07 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10040560 [exp] 42 / 0.0002 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109200 [exp] 181 / 5e-56 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G076000 [exp] 139 / 9e-40 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.009G021400 [exp] 109 / 2e-28 AT4G25200 108 / 3e-29 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.012G022400 [exp] 76 / 6e-16 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.006G034600 [exp] 65 / 3e-12 AT5G51440 68 / 2e-14 HSP20-like chaperones superfamily protein (.1) Potri.015G005801 [exp] 62 / 2e-11 AT4G27670 0 / 1 heat shock protein 21 (.1) Potri.010G053400 [exp] 57 / 3e-09 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.001G192600 [exp] 52 / 1e-07 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.006G093400 [exp] 50 / 1e-07 AT1G53540 112 / 5e-32 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 49 / 3e-07 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10031730 pacid=23180641 polypeptide=Lus10031730 locus=Lus10031730.g ID=Lus10031730.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCTCTTGCTCTGAGGAAACTCCTCTCATCATCCCTGCTCTCCACCTCACTGCGCTTGCCTCGCACGGTCGTCGGAGGCGTCGCTCCCTCAG CGTCTCGGCTATTTAACACCAACGCCGTCCGCGATTACGACGGAGAAGGCGGTGATGAACGCCAGATCGACGCCGAACGCCGCTCCCGTAGCCCTTACTC CCGTGGCCGCGACGATTTCTTCTCAGATGTGGTCGTCCCTTTCTCGCCAAGCAGGTCACTGGGCCAGGTGCTGAACCTGATAGACCAGTACATGGAGAAT CCAATCTTCTCCGGAGCCGGAGCGGCAGGTCCCGCCCGCCTAAGGCGAGGATGGGATGCGCGGGAGACGGAGGAAGGGCTGCAGCTGCGAGTGGAGATGC CAGGACTGAGTAAAGAAGACGTGAAGGTGTCGGTGGAGCAGAACACTCTGGTGATCCGCGGCGAAGCAGCCAAGGAATCGGAAGAGGAAGAGAGCTCGAG GAGGTACTCGAGCAGGATCGACCTGCCGGAGAAGATATACAGGACGGATCAGGTGAAGGCGGAGATGAAGAACGGGGTGCTGAAGGTGACGGTGCCGAAG GTGAAGGAAGAGGAGCGGCAGGACGTCGTTCATGTTGATGTTGAATTCATCTTCTCGATTCTTCTTCCACCTTCTGTCTCTTGTCGGCTGCCTCCTTTCT CCTCACCACCATCAGAAAGAAAACAAGAGATGATTGATCAGATCTCGACATGGGAGACTCCGCCTGTGGTTCGTCTGCTCGTCGAGGAGCATATTACTGG AACTGAAGTTTCCAACCTTAACCCTATCGACGCTGTTAATTTTCTTCAAATGCCCAAGTGCCCAGCTGTGAAACTGAAGGAGATACAGCAACAAAGAGCT ACTGCTTCTTCTCAAACTGGCAAAGCAAGCAGCAGCAAACATCGAAGTAGGAGAAAAGAAAGAAAAATCGAGTAG
AA sequence Show only first row Show all	>Lus10031730 pacid=23180641 polypeptide=Lus10031730 locus=Lus10031730.g ID=Lus10031730.BGIv1.0 annot-version=v1.0 MASSLALRKLLSSSLLSTSLRLPRTVVGGVAPSASRLFNTNAVRDYDGEGGDERQIDAERRSRSPYSRGRDDFFSDVVVPFSPSRSLGQVLNLIDQYMEN PIFSGAGAAGPARLRRGWDARETEEGLQLRVEMPGLSKEDVKVSVEQNTLVIRGEAAKESEEEESSRRYSSRIDLPEKIYRTDQVKAEMKNGVLKVTVPK VKEEERQDVVHVDVEFIFSILLPPSVSCRLPPFSSPPSERKQEMIDQISTWETPPVVRLLVEEHITGTEVSNLNPIDAVNFLQMPKCPAVKLKEIQQQRA TASSQTGKASSSKHRSRRKERKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	0	1
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	1.0	0.9848
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	2.4	0.9806
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	3.0	0.9797
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	3.5	0.9688
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	5.0	0.9681
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	5.5	0.9620
AT3G10020			unknown protein		Lus10003372 [exp]	7.9	0.9595
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	8.0	0.9589
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	9.5	0.9551
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	9.8	0.9478

Compare expression of checked genes

Lus10031730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.