Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51430 1222 / 0 EYE EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031155 [exp] 1519 / 0 AT5G51430 1332 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109100 [exp] 1333 / 0 AT5G51430 1269 / 0.0 EMBRYO YELLOW, conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF10191 [flax] [poplar] COG7 Golgi complex component 7 (COG7)
Representative CDS sequence Show only first row Show all	>Lus10031731 pacid=23180710 polypeptide=Lus10031731 locus=Lus10031731.g ID=Lus10031731.BGIv1.0 annot-version=v1.0 ATGATGCTGGATCTAGGTCCGTTCGCCGACGAGAAGTTCGATCCGAAGAAATGGATCAACTCCGCCTGCCAGGCGAGGCACCCGCAGGAGTCCCTCGACG ACCACCTCGTGGATCTGGAAATGAAGCTACAGATGGTCTCCGAGGAGATCGCGGCGTCGCTAGAGGAGCAGAGCGCCGCCGCTCTCCTCCGCGTCCCTCG CGCCACTCGCGACGTTGTTCGCCTCCGAGACGATGCCGTCTCGCTGCGTAGCTCGATCTCGGCAATCCTCCAGAAGCTGAAAAAGGCAGAGGGATCTTCT GCTGAATCGATTGCGGCACTCGCTAAAGTCGATACGGTTAAGCAGAGAATGGAAGCTGCATACGAAACTCTGCAGGATGCAGCAGGATTAACTCAACTAA GTTCGACTGTGGAGGATGTGTTTGCCAGTGGTGATCTTCCTCGCGCAGCCGAAACATTAGCTAACATGAGACACTGCCTGTCTGCTGTTGGGGAGGTTGC TGAATTTGCTAATGTCAGAAAGCAACTTGAGGTCTTAGAGGACCGGCTTGATTCGATGGTGCAGCCGCGTCTAACAGATGCATTATCCAACCGCAAGGTT GAAGTTGCACAGGATTTACGTGGAATTCTGATGAGAATTGGCAGATTCAAGTCTCTGGAAATGCATTACACTAAGGTCCATTTGAAGCCCATTAGGCAGT TGTGGGAAGATTTTGATGCCAGACAGCAAGCTAATAGGCCTGCAATCGGGAAGAATGAATTTGAGAGGGCGGCAGGCAACAATGACTTGCCAACAGTTCC ATTCTCAAGTTGGTTGCCGAGCTTCTATGATGAACTGCTGATGTATCTTGAACAAGAATGGAAGTGGTGCATGGTTGCGTTCCCTGATGATTACAAAATG CTTGTACCAAAGCTACTAGTTGAGACAATGGCAGCTGTAGGAGCAAGTTTTGTCTCTCGTCTTAACCTTGCCACTGGAGAGGTGGTTCCCGAAACAAAAG CACTCTCAAAAGGTATATTGGATATCTTATCGGCAGATATGCCAAAGGGGATCAAGATTCAGACTAAGCACTTGGAAGCACTGATCGAATTGCACAATAT GACTGGCACCTTTGCCAGGAATATTCAACACTTGTTCTCAGAATCTGATCTTCGAGTTCTCATGGATACTCTGAAGGCTGTTTACCTTCCATATGAATCA TATAAACAAAGGTACGGACAAATGGAACGTGCCATCCTTTCATCGGAGATAGCTGGAGTAGATCTAAGAGGGGCAGTTACTCGTGGCGTGGGAGCGCAAG GAATCGAACTGAGTGAAACAGTTCGGAGAATGGAAGAGTCTATCCCACAAGTCATTGTTCTTCTTGAAGCAGCCGTTGAAAGGTGTGTTGGTTTTACTGG AGGTTCAGAAGTGGACGAGCTGCTTCTTGCACTCGACGATATAATGCTCCAGTACATCTCTTCTCTGCAAGAAACCCTTAAATCCTTAAGGACTGTCTGC GGAGTGGATGATCTCAAGAAAGACTCGAGTTCAGAAAAGAAAGAAGGAACCCAAACTACGCGTAAAGTTGATTTATCGTCCTCACATGAAGAGGAATGGT CTATCGTCCAGGGTGCACTCCAGATACTCACTGTTGCAGATTGTTTGACAAGCAGATCCTCCGTCTTCGAAGCATCATTGAGAGCAGCTCTAGCTAGACT AAGCACAAGTTTATCCTTCTCTGTATTTGGGTCAAGTTTGGACCAAAGCCAGTCACATGGTGTAAACAGTGATGTTGATGGCGAACCTTCATTGGGTGGA AGAGCCGCCTTGGATGTCGCTGCTGTACGTCTCGTTGATGTCCCTGAGAAGGCTAGGAAGCTATTTAACCTTTTGGATCAGTCCAAAGACCCTCGGTTTC ACGCGCTTCCACACGCATCACAGAGAGTTTCAGCATTTGCCGACACAGTAAACGAACTAGTATATGACGTCCTGATATCCAAGGTGAGGCAACGCTTGAG TGATGTATCAAGACTGCCAATCTGGTCGTCAGTTGAAGAGCAGAGCGCTTTCCATCTCCCAACCTTCAGCGCTTACCCGCAAACTTATGTCACCAGCATT GGGGAATACCTGCTTACTTTGCCCCAACAGTTAGAGCCACTGGCTGAGGGCATCTCAAATGGCGATTCCAACAGCGAGGAAGCCCAGTTTTTCGCAGCCG AATGGATGTTCAGGGTTGCAGAGGGAGCAACGGCTCTTTACATGGAGCAGTTGAGAGGGATTCAGTACATAACTGACAAGGGAGCCCAGCAGCTCTCGAC AGACATTGAGTACTTGAGCAACGTGCTCTCTGCTCTGTCGATGGAGGTTCCTCTTCCCCTCGTGACGTTCCAGACCTGTCTCTCCGCGCCAAGAGATCAA CTCAAAGGCCTCGTAAAATCTGACCAACTCGATGGTCCAACCGCAAATCTCGTCTGTAAAATTCGGCGCATTAGCTTAGACTAA
AA sequence Show only first row Show all	>Lus10031731 pacid=23180710 polypeptide=Lus10031731 locus=Lus10031731.g ID=Lus10031731.BGIv1.0 annot-version=v1.0 MMLDLGPFADEKFDPKKWINSACQARHPQESLDDHLVDLEMKLQMVSEEIAASLEEQSAAALLRVPRATRDVVRLRDDAVSLRSSISAILQKLKKAEGSS AESIAALAKVDTVKQRMEAAYETLQDAAGLTQLSSTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANVRKQLEVLEDRLDSMVQPRLTDALSNRKV EVAQDLRGILMRIGRFKSLEMHYTKVHLKPIRQLWEDFDARQQANRPAIGKNEFERAAGNNDLPTVPFSSWLPSFYDELLMYLEQEWKWCMVAFPDDYKM LVPKLLVETMAAVGASFVSRLNLATGEVVPETKALSKGILDILSADMPKGIKIQTKHLEALIELHNMTGTFARNIQHLFSESDLRVLMDTLKAVYLPYES YKQRYGQMERAILSSEIAGVDLRGAVTRGVGAQGIELSETVRRMEESIPQVIVLLEAAVERCVGFTGGSEVDELLLALDDIMLQYISSLQETLKSLRTVC GVDDLKKDSSSEKKEGTQTTRKVDLSSSHEEEWSIVQGALQILTVADCLTSRSSVFEASLRAALARLSTSLSFSVFGSSLDQSQSHGVNSDVDGEPSLGG RAALDVAAVRLVDVPEKARKLFNLLDQSKDPRFHALPHASQRVSAFADTVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSI GEYLLTLPQQLEPLAEGISNGDSNSEEAQFFAAEWMFRVAEGATALYMEQLRGIQYITDKGAQQLSTDIEYLSNVLSALSMEVPLPLVTFQTCLSAPRDQ LKGLVKSDQLDGPTANLVCKIRRISLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	2.8	0.9166
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	5.1	0.9145
AT5G38880			unknown protein		Lus10005085 [exp]	5.5	0.8880
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	7.7	0.9001
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	9.8	0.8911
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	11.2	0.8882
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	12.0	0.8804
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	12.9	0.8339
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	14.7	0.8811
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	14.7	0.8864

Compare expression of checked genes

Lus10031731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.