Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51410 326 / 3e-111 LUC7 N_terminus domain-containing protein (.1.2.3) AT3G03340 72 / 5e-14 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT5G17440 70 / 3e-13 LUC7 related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031156 [exp] 414 / 1e-145 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 383 / 2e-133 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10027212 [exp] 380 / 3e-132 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10026846 [exp] 74 / 2e-14 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 71 / 2e-13 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124300 [exp] 388 / 2e-135 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.003G109000 [exp] 384 / 6e-134 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.019G055000 [exp] 79 / 4e-16 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.013G084800 [exp] 70 / 3e-13 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10031732 pacid=23180796 polypeptide=Lus10031732 locus=Lus10031732.g ID=Lus10031732.BGIv1.0 annot-version=v1.0 ATGGACGCCCAGAGAGCTATGCTAGACAGCCTCATGGGCGCAGATCGTAATTTGACGGAGCACGAAAAGAAGGATTACAAGGAGATCACTTGGGATTCCA AGGAGGTTTGCCCTTACTACATGGCTCGATTCTGCCCTCGCGATCTCTTCGTTAACACCAAGAGCGATCTCGGACCGTGTGAGAGAGTTCATGATCCTAA GCTGAAAGAAAGCTTTGAGAAATCTCCGAGGCATGACAAATTCTTGCTTAAATTCGAGTCCGACCTTGCTCAACGATGTGATAAATTGGTAATGGATTTG GATAGAAGAGTTAGGCGTGGGCGCGAACGGCTTGCTCAAGATGATGAGCCGATGCTACCTCCTCCACTTTCGGCGGAGAAGTCCGAGCAGTTGGCTGTTG TGGAAGAGAAAATAAAGAACTTGCTGGTGCAAGTGGAGGATCTTGGTGAGGCTGGAAAAGTTGATGAAGCTCAAGCTCTTATGAAAAAGGTAGATGAACT GAATACTGAGAAAGCTCTGATTCAAGCTCAGAACGGGAAATTACCAGTGATCCCACAGGATAAAAAGATGACATTGTGCGAGATTTGTGGTTCATTTCTG GTAGCAAATGATGCTCAGGAGAGAACGCAGTCTCATATAACAGGGAAGCAGCACATTGGCTACGGCATGGTTCGTGATTTCATCGCTGAATACAAGGAGG CGAGAGAAAAGGCCAAGGAAGAAGAACGGTTAGCTAGGGAGAAAGAAGCTGAAGAAGGAAGGAATCAACGAGGTGAGGAGAATGAATCTGACAGGAGTAG GAGTGTTTCAGGTGAAAGGGATCGGTATCATGACCGAGACAGGTACAAAGAGCGGGACAGGTACCGTGAACGTGATTATGATAGATCGAGAGACAGGAAC GGTGGAAAGGGTCCACGTAATGGAAGGGATCGGTACCGTGACCGGAGCAGATCACGATCCCCTGCTAGGAACAGTCGCAGGAGGTCCTCTTGA
AA sequence Show only first row Show all	>Lus10031732 pacid=23180796 polypeptide=Lus10031732 locus=Lus10031732.g ID=Lus10031732.BGIv1.0 annot-version=v1.0 MDAQRAMLDSLMGADRNLTEHEKKDYKEITWDSKEVCPYYMARFCPRDLFVNTKSDLGPCERVHDPKLKESFEKSPRHDKFLLKFESDLAQRCDKLVMDL DRRVRRGRERLAQDDEPMLPPPLSAEKSEQLAVVEEKIKNLLVQVEDLGEAGKVDEAQALMKKVDELNTEKALIQAQNGKLPVIPQDKKMTLCEICGSFL VANDAQERTQSHITGKQHIGYGMVRDFIAEYKEAREKAKEEERLAREKEAEEGRNQRGEENESDRSRSVSGERDRYHDRDRYKERDRYRERDYDRSRDRN GGKGPRNGRDRYRDRSRSRSPARNSRRRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	0	1
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	1.0	0.9212
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	3.2	0.9012
AT2G17787			unknown protein		Lus10017274 [exp]	5.7	0.9079
AT4G12760			unknown protein		Lus10001181 [exp]	6.5	0.9166
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	6.5	0.9054
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	8.7	0.9067
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	8.9	0.8894
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	9.9	0.9025
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	10.3	0.9197
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	10.7	0.8861

Compare expression of checked genes

Lus10031732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.