Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) AT5G51400 288 / 3e-99 PLAC8 family protein (.1) AT2G40935 79 / 3e-18 PLAC8 family protein (.1.2.3) AT3G18470 56 / 5e-10 PLAC8 family protein (.1) AT2G37110 53 / 2e-08 PLAC8 family protein (.1) AT1G52200 52 / 2e-08 PLAC8 family protein (.1) AT1G58320 49 / 1e-07 PLAC8 family protein (.1) AT3G18450 50 / 2e-07 PLAC8 family protein (.1) AT1G49030 50 / 3e-07 PLAC8 family protein (.1) AT3G18460 48 / 9e-07 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038926 [exp] 357 / 1e-124 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10027214 [exp] 352 / 2e-124 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10028184 [exp] 278 / 2e-95 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10042885 [exp] 274 / 1e-93 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) Lus10005257 [exp] 80 / 2e-18 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10034298 [exp] 56 / 1e-09 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 56 / 2e-09 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 54 / 3e-09 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10008890 [exp] 50 / 2e-07 AT1G68630 119 / 6e-35 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108800 [exp] 329 / 1e-115 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.001G124500 [exp] 310 / 5e-108 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.002G141600 [exp] 268 / 2e-91 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.006G024900 [exp] 80 / 2e-18 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G109100 [exp] 70 / 9e-15 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 66 / 5e-13 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 65 / 6e-13 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 62 / 9e-12 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.010G108800 [exp] 61 / 3e-11 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 59 / 1e-10 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10031733 pacid=23180677 polypeptide=Lus10031733 locus=Lus10031733.g ID=Lus10031733.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCAAATGGGCGTTCGCATTACGTTAAGCTAACGAAGGAGCAAGCGCCCTTGGAGGAGGACATCAACCCCGGCGAGCTCAACCAACCCATCG ACGTCCCTCAGTTGAATGTGCGCAGGTGTATCGAGTGTGGGCAGCAATTACCGGACGACTTCGAGGCCCCCGAGGACGAGCGTTGGTCGACCGGGATCTT CGGATGTGCCGAAGATTCAGAAAGCTGCTGGACAGGGCTATTCTGCCCGTGTGTCCTGTTTGGGCGAAACTACGAGAAGCTGAAAGACGACGACGAAACA CCATGGACGACACCGTGCATCTGTCACGCTGTGTTTGTAGAAGGCGGTATCGCGCTAGCAGTGGTAATGACACTCTTCCCGGTGATCATAGTAGATCCGG ACACAATGTCACTTATCTGCGAGGGTTTGATGTTCGCTTGGTGGATGTGTGGCATACACACGGGCCTCGTTCGACAGGGGCTACAGAAGAAGTACCATCT CGAGAGCTCTCCATGCGATCCATGCACGGTCCATTGTTGCATGCACTGGTGTGCTCTGTGCCAAGAACACAGGGAGATGCAGGGCCGCCTTGCGGATAAC TTCGTCATGTCGACAACGTTTGTCGATCCGCCTCCGGTACAAGAGATGTCAGCTACATCATGA
AA sequence Show only first row Show all	>Lus10031733 pacid=23180677 polypeptide=Lus10031733 locus=Lus10031733.g ID=Lus10031733.BGIv1.0 annot-version=v1.0 MAEPNGRSHYVKLTKEQAPLEEDINPGELNQPIDVPQLNVRRCIECGQQLPDDFEAPEDERWSTGIFGCAEDSESCWTGLFCPCVLFGRNYEKLKDDDET PWTTPCICHAVFVEGGIALAVVMTLFPVIIVDPDTMSLICEGLMFAWWMCGIHTGLVRQGLQKKYHLESSPCDPCTVHCCMHWCALCQEHREMQGRLADN FVMSTTFVDPPPVQEMSATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45010			PLAC8 family protein (.1.2)		Lus10031733 [exp]	0	1

Compare expression of checked genes

Lus10031733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.