Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47450 599 / 0 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G57180 89 / 1e-18 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10620 69 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031160 [exp] 904 / 0 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031030 [exp] 92 / 2e-19 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 91 / 6e-19 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035986 [exp] 62 / 7e-10 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 56 / 6e-08 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124900 [exp] 683 / 0 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G044700 [exp] 89 / 2e-18 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G010400 [exp] 72 / 6e-13 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031736 pacid=23180620 polypeptide=Lus10031736 locus=Lus10031736.g ID=Lus10031736.BGIv1.0 annot-version=v1.0 ATGGCGACTCAAATTTCGTCTGCATTTCCGTCAACGGTTTCATTACCTCACCGTCTAACGTGCATCAACCCACGATTCGTTCAATTTCACACGAGGACCA TCCTCACCGTATGTAAAATTGCGCAGTCGGTGCACAAATCGCCGGTCTCCGATATCGAAGCTACAATTCCGGTACCCGACATAGATGGAACAGGAGCTGC TGCTCCGGGACGAGGCGAGCAGTTCTTGGAGCGGCAGAGAGCGTTCGAGGCGGAGAAGCTGGTGATGAAAAATGCTAAGAAGAGGAGGAAGAAGGAGGAT AAAAGTAAGCCTGCGAAGGCGGTGGTGAATACGGCGGTGGCTTCTTGTTACGGCTGCGGAGCTCCTTTGCAGACTTCGGAGGTGGACGCGCCTGGTTACG TGGAGGTTGAAACTTATGAGTTGAAGAAGAAGCATCGCCAGCTTAAAACCGTGCTATGTGGGAGGTGTAAGCTTCTGTCTCATGGGCATATGATTACTGC TGTTGGCGGGAACGGAGGGTATTCTGGTGGGAAGCAATTTGTTACCGCGGATGAGCTTCGAGAGAAGCTGTCTCATTTGCGCCATGAGAAGGCGTTGATC GTCAAATTGATTGATCTCCTGCCAAAAGAGACGGACTTTAATTGTGTGGGTGATTGGGTTGTGGAGGCTACCACTAAGAAGAAGCTCAACGTTTTGAGTG TCTACCTCACAAGCGCAAAATCATTAGTTGGGATAACTGGAGTTATAGCAGAGATTCAGAAGGAGAAAAAGGGTTCAGCCAATGTTGGGAAGTCAGCTTT CATTAATGCATTACTGAAGATGTTAGCTGAAAGAGACCCGGCTGCTGCAGCTGCTCGGAAGTACAAACCTATCCAATCTGCTGTTCCAGGAACAACCCTT GGTCCAATTCAGATTAATGCCTTCCTTGGGGGAGCGAAATTGTTTGATACACCTGGAGTCCACCTGCACCATAGGCAAGCTGCAGTAGTAAATTCAGAAG ATCTGCCTCTCCTTGCACCTCGAAGTCGTCTCAAGGCTCAGATTATTCCTAATGCAATTATTGCTGCGAAAAATGGGATCGCTAAAAAGTTGGAATCTGA TGGCTTGAATGGTTTCTCAATTTTCTGGGGAGGTCTTGTCCGTATCGATGTGTTAAAGGTTCTCCCAGAGACATCCTTGATATTCTATGGCCCAAAAGCA TTAACGATTCACTTAGTGCCTACTGATCAAGCTGATGAATACTACCAGAATGAAGTTGGAGTTTTGTTAACACCTCCCACTGGAAAAGATAACTGGAAAG GACTCGAACTCCAGCGCCAACTATGTATAGATTTCGAAGATGCAGAGAGGCCTGCTAGTGATATAGCCATATCGGGGCTGGGATGGATAGCTGTGGAGCC AGTAAGGAAATCACCATCATTATCAATACCTCAGGATTCCAATCTGCAGTTGGTAGAGTCTGCAAAGAAGCTGCATTTTGTGGTTCATGTACCGAGACCA GTAGAGATTTTCGTCCGGCCTCCGTTGCCGGTGGGGAAGGCTGGTTCGGAAAGGTACCAGTACAGAGATTTGACAGACAAGGAAGAGGAAACAAGACCGA AATGGTTCTTTTAG
AA sequence Show only first row Show all	>Lus10031736 pacid=23180620 polypeptide=Lus10031736 locus=Lus10031736.g ID=Lus10031736.BGIv1.0 annot-version=v1.0 MATQISSAFPSTVSLPHRLTCINPRFVQFHTRTILTVCKIAQSVHKSPVSDIEATIPVPDIDGTGAAAPGRGEQFLERQRAFEAEKLVMKNAKKRRKKED KSKPAKAVVNTAVASCYGCGAPLQTSEVDAPGYVEVETYELKKKHRQLKTVLCGRCKLLSHGHMITAVGGNGGYSGGKQFVTADELREKLSHLRHEKALI VKLIDLLPKETDFNCVGDWVVEATTKKKLNVLSVYLTSAKSLVGITGVIAEIQKEKKGSANVGKSAFINALLKMLAERDPAAAAARKYKPIQSAVPGTTL GPIQINAFLGGAKLFDTPGVHLHHRQAAVVNSEDLPLLAPRSRLKAQIIPNAIIAAKNGIAKKLESDGLNGFSIFWGGLVRIDVLKVLPETSLIFYGPKA LTIHLVPTDQADEYYQNEVGVLLTPPTGKDNWKGLELQRQLCIDFEDAERPASDIAISGLGWIAVEPVRKSPSLSIPQDSNLQLVESAKKLHFVVHVPRP VEIFVRPPLPVGKAGSERYQYRDLTDKEEETRPKWFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	0	1
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	5.0	0.9164
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	5.5	0.9061
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	8.1	0.8996
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	9.2	0.9150
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	10.2	0.9086
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	11.2	0.8846
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	13.1	0.9017
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	14.4	0.8866
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	16.4	0.8447
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	16.9	0.9079

Compare expression of checked genes

Lus10031736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.