Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 357 / 2e-111 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 290 / 8e-86 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G44700 250 / 3e-71 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 236 / 6e-67 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 236 / 1e-66 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 234 / 4e-66 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 233 / 1e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 233 / 2e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 230 / 3e-65 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G46330 225 / 9e-63 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031161 [exp] 942 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 307 / 2e-92 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 305 / 7e-92 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 288 / 2e-85 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 278 / 1e-81 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005017 [exp] 268 / 6e-80 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 269 / 2e-78 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 268 / 2e-78 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008230 [exp] 267 / 5e-78 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108200 [exp] 578 / 0 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G037500 [exp] 386 / 6e-124 AT4G08850 551 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 380 / 1e-120 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 378 / 7e-120 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 377 / 2e-119 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 373 / 7e-118 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 371 / 3e-117 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 359 / 4e-112 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 355 / 2e-111 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 357 / 3e-111 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031738 pacid=23180609 polypeptide=Lus10031738 locus=Lus10031738.g ID=Lus10031738.BGIv1.0 annot-version=v1.0 ATGGCAAGGGAAAACCGATTGCTTCTCTGCATCTCTTCATTCCTTCTATTGTCCTGCTTGAGATGCAGCTTGGCTTCAATCACAGAAGTACAAGCTCTGC TGCAATGGAAACAAGGTCTCGGCAACAAATCCGTCCTTCAATCATGGATGACGACGAACCAGAACCAGAACTCGTCAAACCCTACTCCCTGCAAATGGCT TGGGATAGCTTGTGATGCTGCTTCGGGGAGTGTGACAGAGATAAACCTTTCCTACCTAAACATGACAGGTACCTTGCAGAACCTGAACTTCTCTTCATTC CAGAATCTCCTCCGACTCGATCTTAAATACAACCAGTTCACCGGCACCATTCCGGACACCATAAGCTTGCTTTCCAATCTCGAGTTCCTTGCCCTATCTA CCAATTACCTCTCCGGCACGATCCCTTCTTCTCTTGCGAATCTGACTCGGGTTACTGAGCTCGACCTTTCGAGGAATGACATCAACGGAACTCTTGACCC ACGTCTTTTCTCCGAGACTGGCCTCGCTAGTCTGCAGAACTTGCTTATAGAAACCACTGGTGTTGGTGGGAGTATTCCTGAGGAGATAGGAAACCTGAAG AATCTTTCAATTTTGGCATTTGGGGAGAACCAGTTTTCTGGTTCGATTCCTTCTTCTCTGGGGAACTTGACTGAGCTAACAATTTTACGCCTTTATGCTA ATCAGCTTTCAGGACCGCTCCCACTGGGTATAGAAAACCTGAGCAAGCTGACCGATATCCGCTTGTTCACGAACAATTTGTCTGGCAATGTACCTCCAGG AATAGGCAACCTTTCTTCATTGACAGTCCTACACCTTGGAGATAACCACTTAACCGGTTATTTGCCGCAAGAAGTGTGTAAAGGTGGGAAATTGATCAAC TTCACAGCTGACGGGAACAACTTCTATGGCCCAATCCCAAGAACCCTCCGGAACTCTTCTTCGCTGTACAGAGCCCGTTTCGAGTACAATCAGCTGGAAG GAAACCTGAACCGAGACTTTGGGGTATACCCGAATCTCACTTACATTGATCTGACTGGCAACAATTTGGAAGGGGAAGTCTCTTTACAGTGGGCACAGAG CCAAAGCTTGACATACTTAGCACTTGGTGGGAACAAGCTGACTGGCGAAATCCCAAATGAGCTCCTTCAACTGGAGAAGCTAGTGGAGCTCGACCTGTCA TCGAATCGAATTACCGGAGTAATCCCTGCGGACATTGGAAGGTTTTCCGGATTGATGAGTCTAACTCTCAACGGAAACATGCTTTCAGGTCAGATTCCAG TGGGGATCGGGACAATGTCAAGCTTGCAGTATCTAGACCTTCCGATGAACATGTTGACTGGCTCAGTTCCATCTCAGCTTGGAGATTGCTCCCGGCTTCA GCTCTTAAACCTCAGCACAAACAATCTCAGTGGGAGCATTCCATTTCAAATTGGTAATCTTGTAGCTCTACAAGATTTACTGGATCTAAGCTACAATTCG TTCACAGGGGCGATACCTTCTCAGTTCAGTAAGCTTACCACTCTGGAGAATTTGAATCTCCCTCACAACAGTCTTTCTGGCTCAATCCCTCCTTCCCTGA CAAATCTATTGAGCTTGATCTCTCTCAATCTTTCCTACAATCAATTGGAAGGACCCATCCCTAATAGCCAAGCATTTCAGTCAGCTCCACCATCTGCTTA CTCAAACAACAAAGACGTATGCGGCGAATCGCATACCTTATTGAGATCATGCAGTGATCCGGTCGTCGTTGTCGCTAATCGTCCAAACAAGAGAAGACAA ACTGTCCTTCCCACTCAGGCGAAACGAACACTCTGTCAATCCTAG
AA sequence Show only first row Show all	>Lus10031738 pacid=23180609 polypeptide=Lus10031738 locus=Lus10031738.g ID=Lus10031738.BGIv1.0 annot-version=v1.0 MARENRLLLCISSFLLLSCLRCSLASITEVQALLQWKQGLGNKSVLQSWMTTNQNQNSSNPTPCKWLGIACDAASGSVTEINLSYLNMTGTLQNLNFSSF QNLLRLDLKYNQFTGTIPDTISLLSNLEFLALSTNYLSGTIPSSLANLTRVTELDLSRNDINGTLDPRLFSETGLASLQNLLIETTGVGGSIPEEIGNLK NLSILAFGENQFSGSIPSSLGNLTELTILRLYANQLSGPLPLGIENLSKLTDIRLFTNNLSGNVPPGIGNLSSLTVLHLGDNHLTGYLPQEVCKGGKLIN FTADGNNFYGPIPRTLRNSSSLYRARFEYNQLEGNLNRDFGVYPNLTYIDLTGNNLEGEVSLQWAQSQSLTYLALGGNKLTGEIPNELLQLEKLVELDLS SNRITGVIPADIGRFSGLMSLTLNGNMLSGQIPVGIGTMSSLQYLDLPMNMLTGSVPSQLGDCSRLQLLNLSTNNLSGSIPFQIGNLVALQDLLDLSYNS FTGAIPSQFSKLTTLENLNLPHNSLSGSIPPSLTNLLSLISLNLSYNQLEGPIPNSQAFQSAPPSAYSNNKDVCGESHTLLRSCSDPVVVVANRPNKRRQ TVLPTQAKRTLCQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031738 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	7.9	0.7680
AT3G13290		VCR	varicose-related (.1)		Lus10039096 [exp]	11.6	0.7088
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	21.4	0.7439
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	26.1	0.6875
AT3G12540			Protein of unknown function, D...		Lus10040290 [exp]	28.0	0.7346
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	35.6	0.7287
AT3G56380		ARR17	response regulator 17 (.1)		Lus10029027 [exp]	64.6	0.6501
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	73.5	0.6430
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	75.1	0.6847
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	106.4	0.6424

Compare expression of checked genes

Lus10031738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.