Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61450 572 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60760 45 / 7e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 42 / 0.0009 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031163 [exp] 907 / 0 AT5G61450 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021447 [exp] 48 / 1e-05 AT5G60760 422 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016116 [exp] 48 / 1e-05 AT5G60760 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125700 [exp] 618 / 0 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108000 [exp] 595 / 0 AT5G61450 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G009200 [exp] 43 / 0.0006 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 42 / 0.0006 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031740 pacid=23180818 polypeptide=Lus10031740 locus=Lus10031740.g ID=Lus10031740.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGGACGGAAGTGATGGTTGGGCCATCTTCCAGCCCTAGCAGTAACAAGCGCTACGGCGACGAGGACGACGATCCGGATCATCACTCTTCCT CCGACTTCAAGTTCTCCGCTCGCAATGCCGCCTCCAAATACGATTTCGTCAAGGTGAAGGTTTGGTTGGGAGATAACGCCGATCATTACTACGTACTTTC AAGATTCTTGCTCAGCAGAATGTTAACTGTTACCAAGATACCGAATCATGTAGCAGTTAAGATTGCTCTTGAACTCAAGAAGTTGCTGGTTGATAACAGC CTCCTTGACGTTTCCCAGTCAGATTTGGAGGCTAACCTATTCAAGCTCATGGAGAGGCGGGGATATGGGGAAGAGTACATCAACAGATATAAGATGATGA CAAGATTCCACCATCAGAGGGTGCCACTGGTGATTCTTGTTTGTGGAACAGCTTGTGTTGGGAAGTCTACTATAGCTACTCAACTTGCACAAAGGCTGAA TTTGCCCAACGTCTTGCAGACGGAAATGGTTTATGAGCTACTGCGGACATCAACCGATGCGCCTTTGTCATCTACTCCTGTTTGGGCGCGGGATTTCAGC TCCCCTGAGGAATTCATTACTGAATTTTGTAGAGAATGCAGAATAGTTCGTAAAGGTTTGGCTGGTGACTTGAAGAAAGCAATGAAAGATGGAAAACCAA TCATAATTGAGGGGATACACCTTGACCCTAGTATCTATTTAATGGATGAAGACAATAAGACACCAGACAGTGTGCCTGAAAGAACTGGAATGATAACTCC ATTCTCGGTTGAAAAATCCACATTAGGACGTGAGCCTTCAAGGGATCCGGAAGACAATGGTCCTAGTGTTAGTGGCACTCAATCTGAGGATCTAGTTGGC TCTCGTGAGAATGAAGCTGCAGAAGAATCGAAATTCGGTGACAAACAGGAGTCCCACTTGGATAATATGAAAACTGCTGAAGGGCCAAAAAGTCGTAATG AGAATAAAGCTACTAAGGGCCCAAAAGAAGAGGAAAACCTTTACATCAAGAAAGCAAAGTCTGGTGCTGATCCGATAATCATACCAATTGTTCTAAAGAT GGGTGAATTTGACCACAAGGCATTACTGGAAGAGTGGATCTCTGCTCGCATACCTAGCGACAAGTACCAAGTAAAGGATAAAGATCGGCTAATGGCCAAT CTAAAAACGCTTCAGGACTATCTCTGCTCTTTCACGTCGCAGGGCCTAACTGTTGCTAATATATCTGCAACAACCTTCCCTCAAACACTGGATTGGCTCC ACGGCTATCTTCTTCAGTGTATCGAGCAAGGGATTTCATCGGCTTCCAATGAAAACGATATGCAGCCGGCTCGAAATTAA
AA sequence Show only first row Show all	>Lus10031740 pacid=23180818 polypeptide=Lus10031740 locus=Lus10031740.g ID=Lus10031740.BGIv1.0 annot-version=v1.0 MGKGTEVMVGPSSSPSSNKRYGDEDDDPDHHSSSDFKFSARNAASKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAVKIALELKKLLVDNS LLDVSQSDLEANLFKLMERRGYGEEYINRYKMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTEMVYELLRTSTDAPLSSTPVWARDFS SPEEFITEFCRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEDNKTPDSVPERTGMITPFSVEKSTLGREPSRDPEDNGPSVSGTQSEDLVG SRENEAAEESKFGDKQESHLDNMKTAEGPKSRNENKATKGPKEEENLYIKKAKSGADPIIIPIVLKMGEFDHKALLEEWISARIPSDKYQVKDKDRLMAN LKTLQDYLCSFTSQGLTVANISATTFPQTLDWLHGYLLQCIEQGISSASNENDMQPARN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	0	1
AT1G55535			unknown protein		Lus10021858 [exp]	1.4	0.8618
AT5G55060			unknown protein		Lus10000118 [exp]	1.4	0.8474
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	7.7	0.8252
					Lus10025603 [exp]	8.8	0.7879
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	10.8	0.8177
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	11.5	0.7911
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	13.8	0.7759
AT4G18490			unknown protein		Lus10034597 [exp]	15.5	0.7933
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	15.9	0.7954
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	16.0	0.7961

Compare expression of checked genes

Lus10031740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.