Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 503 / 3e-176 RNI-like superfamily protein (.1) AT5G51380 471 / 5e-164 RNI-like superfamily protein (.1) AT5G51370 451 / 3e-156 RNI-like superfamily protein (.1.2) AT4G15475 77 / 9e-15 F-box/RNI-like superfamily protein (.1) AT2G25490 73 / 2e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 66 / 2e-11 RNI-like superfamily protein (.1) AT5G25350 59 / 5e-09 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 58 / 9e-09 RNI-like superfamily protein (.1) AT5G27920 54 / 1e-07 F-box family protein (.1) AT1G47056 50 / 2e-06 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031164 [exp] 837 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10031165 [exp] 622 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 605 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 604 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10038927 [exp] 601 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027218 [exp] 589 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10002014 [exp] 84 / 6e-17 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 83 / 2e-16 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 80 / 1e-15 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 580 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 578 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 469 / 2e-162 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 461 / 2e-159 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 86 / 1e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 85 / 3e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 72 / 2e-13 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 71 / 1e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 68 / 6e-12 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 65 / 8e-11 AT5G27920 626 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031741 pacid=23180563 polypeptide=Lus10031741 locus=Lus10031741.g ID=Lus10031741.BGIv1.0 annot-version=v1.0 ATGTCTTCGTTGGAAGGAGCGAAGAAGAAGGAGAACGTCGAACTGTCTTGCTCAGAAGTAGTACCGCCCATTTCCGTGGCTGAAACCCTAGTTTTGTCCT CCAAGCCCTCTTCTTCTTCCGCCGCCGACATTGTTGACCGTACTTTGCTCTTGAACGACGAAATCCTCCTCAAGATCCTGTCTTTCATCCCGGTGTTCCA TAGGAACTCCAAATGCCGGCTCGTTTGCAAGCGGTGGCGCAATCTCCAAGCTCGCCTGGTTAAGTCTCTCAGGATATTGCACTGGGAGGTACTCGAATCA GGTGGGTTGACTTCTAGGTTTCCTGGTTTGACCAGCGTTGATTTGATCAATGCATGTGTAGTGAACCCGGCGGGTTCAAGTATTTGCTTGACACATCGCC TTATAACTGCGGATTTGGACTGTGGAATATCTGGATTCTTGACAAGTTGGAAGGTTTGTGAGGAGAATTTGCTGTCTGTTGAAATTGTTGATAGAGGTCT CAAAGCTTTGGCTAGTGAGTGTCCTAATCTGAGCAAACTTGCTGTGATTGGAGCTAGCGAGCTAGGGCTGTTAAGTGTAGCTGTAGAATGTCCAACGTTG CAAGAACTGGAGCTCCACAAGTGTGATGATGATGTCCTTCCAGGGATTGCTGCTTGTACCAACTTGCAGATACTGAAGATTGTGGGGAACGTGTACGGAC TGTACAGTTCTTCTGTTTCGGACGTTGGTTTGACGATTCTGGCTCAAGGGTGCAAGAGATTGTTGAAGCTTGAGCTGAGCGGATGCCAGGGGAGCTTCGA TGGGATCAAGGCGATCGGCCAGTGCTGCCAGATGCTTGAAGAGTTGACTGTTTGTGATCATGAGATGGATGATGGGTGGTTGGCTGCGCTTCCTTTCTGT GAGAATTTGAAGACTCTGAGGTTGGTTTCGTGTAAGAGGGTAGACTTTGAGCCGGGACCGGATGAGTATCTGGGTTGCTGTTCTGCCCTTGAAAAATTAC ACTTGGAAAGGTGTCAGTTGAGGGATAAGAATGGTGTTAGAGCTTTGTTTAAGATTTGTGAAACGGTGAGGGAAGTTGTTGTTCATGATTGCTGGGGATT AGACGACGAAGTGTTCAGCTTCGCAAGCATTTGCAGGAGAGTAAACTTGCTCTATTTAGAAGGTTGCTCCTTGTTGACAACTGAAGGGCTCGAGTCGGTG ATCCTAACCTGGAACGAGCTCCAGCATCTCCAGATCGAGTCGTGTAAGAACATTAAAGATGGCGATATCTCTCCATATCTTTCCAACTTATTCACCAGCC TGAAAGAGCTGAGATGGAGGCCGGACTCCAAGTCAATCCTTGCAGCGGGTCTTGTGGGAACCGGCATAGGGGAGAAAGGCAGCAAGTTCTTCAGGAAATC GTGA
AA sequence Show only first row Show all	>Lus10031741 pacid=23180563 polypeptide=Lus10031741 locus=Lus10031741.g ID=Lus10031741.BGIv1.0 annot-version=v1.0 MSSLEGAKKKENVELSCSEVVPPISVAETLVLSSKPSSSSAADIVDRTLLLNDEILLKILSFIPVFHRNSKCRLVCKRWRNLQARLVKSLRILHWEVLES GGLTSRFPGLTSVDLINACVVNPAGSSICLTHRLITADLDCGISGFLTSWKVCEENLLSVEIVDRGLKALASECPNLSKLAVIGASELGLLSVAVECPTL QELELHKCDDDVLPGIAACTNLQILKIVGNVYGLYSSSVSDVGLTILAQGCKRLLKLELSGCQGSFDGIKAIGQCCQMLEELTVCDHEMDDGWLAALPFC ENLKTLRLVSCKRVDFEPGPDEYLGCCSALEKLHLERCQLRDKNGVRALFKICETVREVVVHDCWGLDDEVFSFASICRRVNLLYLEGCSLLTTEGLESV ILTWNELQHLQIESCKNIKDGDISPYLSNLFTSLKELRWRPDSKSILAAGLVGTGIGEKGSKFFRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10031741 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Lus10031165 [exp]	3.7	0.6890
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	10.2	0.7155
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	20.7	0.7016
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	24.0	0.7141
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	25.2	0.6923
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Lus10036082 [exp]	36.4	0.6200
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	38.3	0.6920
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	38.9	0.6471
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	42.3	0.6741
AT2G20495			unknown protein		Lus10022916 [exp]	43.0	0.6727

Compare expression of checked genes

Lus10031741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.