Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 513 / 1e-179 RNI-like superfamily protein (.1) AT5G51380 469 / 2e-162 RNI-like superfamily protein (.1) AT5G51370 435 / 1e-149 RNI-like superfamily protein (.1.2) AT4G15475 79 / 2e-15 F-box/RNI-like superfamily protein (.1) AT5G23340 78 / 3e-15 RNI-like superfamily protein (.1) AT2G25490 67 / 1e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 64 / 1e-10 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 55 / 1e-07 F-box family protein (.1) AT5G01720 55 / 1e-07 RNI-like superfamily protein (.1) AT1G21410 50 / 2e-06 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031165 [exp] 868 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10038927 [exp] 640 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027218 [exp] 634 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10031741 [exp] 627 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 626 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 600 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10012764 [exp] 87 / 9e-18 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 80 / 6e-16 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 80 / 7e-16 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107900 [exp] 602 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.001G125800 [exp] 595 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 471 / 8e-163 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 464 / 6e-160 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 90 / 4e-19 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 73 / 2e-13 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 73 / 3e-13 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 65 / 8e-11 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 61 / 1e-09 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G068500 [exp] 61 / 1e-09 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031742 pacid=23180669 polypeptide=Lus10031742 locus=Lus10031742.g ID=Lus10031742.BGIv1.0 annot-version=v1.0 ATGGGCTCTTTACAGGAGGAGAAACCGATTACTCCGACGACGGTGACGAAGAAGAAGAAGAAGAACATGAGATCGTCGAACTGGTCCGATCTCTGGCTGA AGAGTTCTGTCTCCAAGTCTCTGAAGCATGTCGTCTTCGCTCTGCAAGTCCCGACTCTGTCCAAAACTCATTCGGACGAATTTCACAAGCCCGTCGCGAC TGCTCCGCCGTTCCCGAAGGACAAACTCCAAACTTTGATCTTCAATGTCTCCGACATTGTCGACCGTACCTTGTTCCTGAACGATGACATCCTCCTAAAG ATCCTGTCTTTGTTACCCGATTCACAGAGGAAATCCAATTGCCTTGTTTCCAAGCGCTGGCTCAATCTGCAAGGGAGGCTTGTCAGGTCGATTAAGATAT TGGGTTGGGAGTTTCTCGAATCAGGTCGGTTGATTTCCAGGTTTCCTAATTTGAGTCATGTGGATTTGATCAATGGGTGTGTTGTTAATGTTAACCCTTA TGATTCGAGATTTTGCTTGAGCAATCGGGTTGTCTCGGCGGAATTGGACTCTAGGGTTTTTGAATTGTTGCCAAGTGGGGGAGTCTGTGAGGAGAAATTG TTGCCAGTTGAGATTGTGGATAGAGGGCTTACAGCTTTAGCCAACGGGTGTCCTAATCTACGCAGGCTGGCAGTGATCGGTGCCAGTGAACTCGGGCTGT TATACGTCGCTGAAGAATGTCCAACGTTGCAGGAGTTGGAGCTGCACCGATGTAACGACAGTGTGCTTCGCGGGATTGCAGCTTGTTCGAATTTACAGAT ACTGAAGCTTGTGGGGAATGTGTATGGTCTTTACAGTTCGTTGGTTTCGGATGTTGGTTTGACGATTCTGGCTCAGGGTTGTAAGAGACTGGTGAAGCTT GAGCTCAATGGATGCGAGGGTAGCTTCGATGGGATTAAGGCGATCGGGGAGTGCCGCCAGATGCTTGCAGAGTTGACTGTGTGTGATCATAGGATGGATA ATGGGTGGCTGGCTGCTCTTCCTTTCTCTGAAAATTTGAAGACTTTGAGGCTTCTTTGGTGTAGGAAGATAGATCCTGTACCGGGGCCGGATGAGTATCT GGATTGTTGTTCTGCCCTTGAAAGACTGCATTTGGAGAGATGTCAGTTGAGGGACAAAGAAAGCGTCCGAGCTTTGTTTAAGGTGTGTGAAAACGCCAGG GACATTGTTGTCCAGGATTGCTGGGGATTGGACAATGACATGCTCGGTTTTGCGAGCACTTGCAGGAGAGTAAAGCTACTCTATCTGGAAGGATGCTCAT TGCTGACAATAGAAGGCCTCGAATCCGTGCTTCTAAGATGGAACGAGCTCGAGAATCTCAAGATAGAGTCCTGCAAGAACATCAACGACGGCGAGATATC TCCAGCGCTTTCAATCCTATTCTCTAGTCTTAAAGAGCTAAGGTGGAGGCCAGATTCCTCCAAATCACTCCTCGCAGCAGGTCTTCCAGGGACTGGCTTC GGACAGAAAGGCCGCAGATTCTTCAGGAAGTCATGA
AA sequence Show only first row Show all	>Lus10031742 pacid=23180669 polypeptide=Lus10031742 locus=Lus10031742.g ID=Lus10031742.BGIv1.0 annot-version=v1.0 MGSLQEEKPITPTTVTKKKKKNMRSSNWSDLWLKSSVSKSLKHVVFALQVPTLSKTHSDEFHKPVATAPPFPKDKLQTLIFNVSDIVDRTLFLNDDILLK ILSLLPDSQRKSNCLVSKRWLNLQGRLVRSIKILGWEFLESGRLISRFPNLSHVDLINGCVVNVNPYDSRFCLSNRVVSAELDSRVFELLPSGGVCEEKL LPVEIVDRGLTALANGCPNLRRLAVIGASELGLLYVAEECPTLQELELHRCNDSVLRGIAACSNLQILKLVGNVYGLYSSLVSDVGLTILAQGCKRLVKL ELNGCEGSFDGIKAIGECRQMLAELTVCDHRMDNGWLAALPFSENLKTLRLLWCRKIDPVPGPDEYLDCCSALERLHLERCQLRDKESVRALFKVCENAR DIVVQDCWGLDNDMLGFASTCRRVKLLYLEGCSLLTIEGLESVLLRWNELENLKIESCKNINDGEISPALSILFSSLKELRWRPDSSKSLLAAGLPGTGF GQKGRRFFRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	0	1
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	2.8	0.9575
AT5G16250			unknown protein		Lus10026857 [exp]	3.9	0.9496
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	5.7	0.9470
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	7.7	0.9535
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	8.8	0.9441
AT4G17000			unknown protein		Lus10035651 [exp]	9.0	0.9522
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	11.3	0.9499
AT5G12360			unknown protein		Lus10039048 [exp]	12.4	0.9460
AT4G02800			unknown protein		Lus10042577 [exp]	12.6	0.9209
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	15.3	0.9489

Compare expression of checked genes

Lus10031742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.