Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79550 715 / 0 PGK phosphoglycerate kinase (.1.2) AT3G12780 684 / 0 PGK1 phosphoglycerate kinase 1 (.1) AT1G56190 677 / 0 Phosphoglycerate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031167 [exp] 688 / 0 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2) Lus10031168 [exp] 678 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031744 [exp] 678 / 0 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084400 [exp] 729 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171600 [exp] 729 / 0 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171500 [exp] 687 / 0 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084500 [exp] 686 / 0 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.016G091800 [exp] 165 / 4e-45 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00162 [flax] [poplar] PGK Phosphoglycerate kinase
Representative CDS sequence Show only first row Show all	>Lus10031743 pacid=23180629 polypeptide=Lus10031743 locus=Lus10031743.g ID=Lus10031743.BGIv1.0 annot-version=v1.0 ATGGCTACTAAGAAGAGCGTCGGAACCTTGAAGGAGGCCGATTTGAAGGGGAAGAGAGTCTTCGTCAGGGTAGATCTCAACGTCCCTCTCGACGACAACC TCAAGATCACCGATGACACCAGGGTCCGAGCTGCTGTCCCCACCATCAAGTACTTGATGGATCATGGAGCCCGCGTCATTCTCTCTTCTCACTTGGGTCG TCCAAAGGGTGTCACCCCCAAGTATAGCTTGAAGCCTCTGGTGCCAAGACTATCGGAACTTCTTGGTGTTGAGGTTAAGATGGCCAATGACTGTATTGGT GAGGAGGTTGAGAAATTGGTGGCTGAGACCCAAAATGGAAGTGTACTGCTTCTTGAGAATGTAAGATTCTACAAGGAGGAGGAGAAGAATGATCCTGAGT TCGCCAAGAAGCTAGCTTCACTAGCAGATGTCTATGTTAACGATGCCTTCGGTACAGCCCACAGGGCCCATGCTTCTACTGAAGGTGTTGCCAAGTTTGT GAAACCTGCCGTTGCTGGTTTTCTCATGCAGAAGGAACTTGATTATCTTGTTGGGGCTGTTTCAAACCCCAAGAAGCCTTTTGCTGCCATCGTTGGTGGG TCTAAGGTCTCATCCAAGATTGGAGTGATCGAGTCTCTATTGGAGAAGGTTGATGTGCTATTGCTTGGTGGAGGAATGATCTTTACATTCTACAAGGCAC AGGGGAAGAAAGTTGGGTCATCCCTGGTGGAGGAAGACAAAATCGAACTTGCAACTTCACTCTTCGAGAAGGCAAAGGCTAAGGGAGTGTCTCTGCTCTT GCCTACTGATGTCGTCATTGCCGACAAGTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCATCCGAGATCCCCGATGGATGGATGGGTTTGGACATC GGACCAGATTCCATCAAGACGTTCAGCCAATCATTGGACACCACAAAGACTGTCATCTGGAATGGACCTATGGGAGTGTTTGAGATGGAGAAGTTTGCTG TTGGAACTGAGGCAATTGCGAAGAAGCTGGCAGAGCTGAGCGGCAAGGGAGTGACCACAATCATCGGAGGAGGCGACTCAGTGGCCGCAGTGGAGAAAGT GGGTCTGGCCGACAAGATGAGCCACATTTCGACCGGAGGAGGTGCCAGTTTGGAGCTTCTGGAGGGGAAGCCACTCCCTGGAGTCCTTGCTCTTGATGAA GCTTGA
AA sequence Show only first row Show all	>Lus10031743 pacid=23180629 polypeptide=Lus10031743 locus=Lus10031743.g ID=Lus10031743.BGIv1.0 annot-version=v1.0 MATKKSVGTLKEADLKGKRVFVRVDLNVPLDDNLKITDDTRVRAAVPTIKYLMDHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIG EEVEKLVAETQNGSVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKFVKPAVAGFLMQKELDYLVGAVSNPKKPFAAIVGG SKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGKKVGSSLVEEDKIELATSLFEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDI GPDSIKTFSQSLDTTKTVIWNGPMGVFEMEKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDE A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	2.2	0.9347
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	3.2	0.9342
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	3.9	0.9311
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10025834 [exp]	5.5	0.8999
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	6.6	0.9229
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	8.1	0.9198
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	9.2	0.9202
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	9.4	0.9150
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	9.5	0.9002
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	10.6	0.9171

Compare expression of checked genes

Lus10031743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.