Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56190 744 / 0 Phosphoglycerate kinase family protein (.1.2) AT3G12780 740 / 0 PGK1 phosphoglycerate kinase 1 (.1) AT1G79550 692 / 0 PGK phosphoglycerate kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031168 [exp] 861 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031743 [exp] 677 / 0 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2) Lus10031167 [exp] 598 / 0 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171500 [exp] 753 / 0 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084500 [exp] 749 / 0 AT1G56190 768 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084400 [exp] 679 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171600 [exp] 675 / 0 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2) Potri.016G091800 [exp] 196 / 3e-55 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00162 [flax] [poplar] PGK Phosphoglycerate kinase
Representative CDS sequence Show only first row Show all	>Lus10031744 pacid=23180573 polypeptide=Lus10031744 locus=Lus10031744.g ID=Lus10031744.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCTACTGCTCCCACCTCACTCTCCCTCCTCAAGGCCACTGCTTCTTCCTCCTGCGCCTCCCGATCCCGCGCTTCCATTCTCCCCTTCTCCG CCTTCCGCCGCCAATCCTCCTCCTCGGCGGCGTCCGCCCGCAACAGCATCGGTTTCTCCGCTGCTGAGCCTCTATTCGCTTCAAATGGTGGGTCTCCCTC CATCGTCCGATCTAGGCCTTACAGGCGCCTTGTCGTCTCCATGGTCAAGAAGAGCGTCGGCGATTTGACCTCCTCTGAACTCAAGGGGAAGAAGGTCTTC GTTAGGGTCGATTTGAATGTTCCACTTGATGATAACCAGAATATCACTGATGATACTAGGATCAGAGCTGCTATCCCTACCATCAAGCATTTGATGGAGA ATGGCGCTAAAGTCATCCTTTCCAGTCACTTGGGTCGACCAAAAGGAGTTACACCAAAGTTCAGTTTGGCACCTCTGGTCCCCAGGTTATCTGAGCTCCT TGGTATTCAGGTTGTGAAGGCTGAGGATTGCATTGGCCCAGAGGTAGAGAAATTAGTTGCTGGTCTCCCTGAGGGAGGAGTTCTTCTCCTAGAGAATGTG AGGTTTTACAAGGAGGAAGAAAAGAACGAGCCTGAATTCGCCAAGAAGCTTGCCTCGGTTGCTGATCTGTTTGTAAACGACGCTTTCGGTACTGCCCACA GAGCTCATGCTTCCACTGAAGGAGTCACCAAGTTCTTGAAGCCTTCCGTTGCCGGCTTCCTCTTGCAGAAGGAGCTTGATTACCTTGTAGGGGCGGTTTC GAGTCCGAAGAGACCGTTCGCTGCCATTGTTGGTGGTTCCAAGGTGTCGTCCAAGATTGGAGTCATTGAATCGCTATTGGAGAAGTGCGATATCCTTTTC TTGGGCGGAGGAATGATATTCACCTTCTACAAGGCTCAAGGTCTGTCAGTCGGTTCGTCGTTGGTTGAGGAAGATAAGCTTGAACTTGCTACCTCTCTAA TGGAGAAGGCCAAGGCAAAGGGAGTGTCTTTGTTGTTGCCTACTGATGTCGTCATTGCTGACAAATTCGCTCCTGATGCAAACAGCAAGATTGTCCCAGC AACGGCTATTCCTGATGGCTGGATGGGACTGGACATTGGTCCAGACTCCATTAAGTCTTTCAATGAAGTGCTGGAGACTACCAAAACCGTCATTTGGAAC GGTCCCATGGGAGTTTTCGAGTTCGAAAAGTTCGCAGCCGGAACAGAGTCTGTTGCAAAGAAGCTAGCGGACCTGAGCGCCAAGGGAGTCACCACGATCA TCGGAGGTGGAGATTCAGTGGCAGCGGTGGAGAAGGTAGGAGTAGCAAGTGCGATGAGCCACATTTCGACAGGAGGAGGAGCGAGCTTGGAGCTATTGGA AGGAAAGGAGCTTCCAGGAGTGCTGGCACTAGACGAAGCCACACCAGTTGCTGTGTAA
AA sequence Show only first row Show all	>Lus10031744 pacid=23180573 polypeptide=Lus10031744 locus=Lus10031744.g ID=Lus10031744.BGIv1.0 annot-version=v1.0 MASATAPTSLSLLKATASSSCASRSRASILPFSAFRRQSSSSAASARNSIGFSAAEPLFASNGGSPSIVRSRPYRRLVVSMVKKSVGDLTSSELKGKKVF VRVDLNVPLDDNQNITDDTRIRAAIPTIKHLMENGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKAEDCIGPEVEKLVAGLPEGGVLLLENV RFYKEEEKNEPEFAKKLASVADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILF LGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPATAIPDGWMGLDIGPDSIKSFNEVLETTKTVIWN GPMGVFEFEKFAAGTESVAKKLADLSAKGVTTIIGGGDSVAAVEKVGVASAMSHISTGGGASLELLEGKELPGVLALDEATPVAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	0	1
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	1.0	0.9966
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	1.4	0.9626
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	2.4	0.9603
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	4.0	0.9433
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	5.5	0.9498
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	5.5	0.9377
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	5.7	0.9505
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	6.0	0.9411
AT5G42070			unknown protein		Lus10023063 [exp]	7.9	0.9475
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	8.1	0.9491

Compare expression of checked genes

Lus10031744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.