Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03170 103 / 2e-28 ASK14 SKP1-like 14 (.1) AT2G03190 102 / 1e-27 ASK16 SKP1-like 16 (.1) AT1G20140 100 / 5e-27 ASK4 SKP1-like 4 (.1) AT4G34210 100 / 6e-27 ASK11 SKP1-like 11 (.1) AT4G34470 99 / 2e-26 ASK12 SKP1-like 12 (.1) AT2G25700 98 / 4e-26 ASK3 SKP1-like 3 (.1) AT3G21860 97 / 1e-25 ASK10 SKP1-like 10 (.1) AT3G21850 96 / 2e-25 ASK9 SKP1-like 9 (.1) AT2G03160 95 / 1e-24 ASK19 SKP1-like 19 (.1) AT5G42190 94 / 2e-24 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031171 [exp] 299 / 4e-105 AT2G03170 108 / 3e-30 SKP1-like 14 (.1) Lus10004140 [exp] 114 / 2e-30 AT2G20160 94 / 6e-23 MEIDOS, ARABIDOPSIS SKP1-LIKE 17, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019432 [exp] 102 / 4e-28 AT1G20140 186 / 2e-61 SKP1-like 4 (.1) Lus10041874 [exp] 102 / 6e-28 AT4G34210 201 / 3e-67 SKP1-like 11 (.1) Lus10017282 [exp] 102 / 1e-27 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10002803 [exp] 102 / 1e-27 AT1G20140 189 / 3e-62 SKP1-like 4 (.1) Lus10005610 [exp] 101 / 2e-27 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10013575 [exp] 101 / 3e-27 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017281 [exp] 101 / 3e-27 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094800 [exp] 166 / 1e-52 AT3G21860 114 / 2e-32 SKP1-like 10 (.1) Potri.016G028300 [exp] 116 / 5e-33 AT2G03170 79 / 6e-19 SKP1-like 14 (.1) Potri.009G135800 [exp] 112 / 1e-31 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 102 / 1e-27 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 100 / 7e-27 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.002G018700 [exp] 97 / 7e-26 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 95 / 7e-25 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G085200 [exp] 91 / 3e-23 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.001G132300 [exp] 70 / 2e-15 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 65 / 2e-13 AT4G34210 130 / 1e-39 SKP1-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10031747 pacid=23180631 polypeptide=Lus10031747 locus=Lus10031747.g ID=Lus10031747.BGIv1.0 annot-version=v1.0 ATGTCAACCGACGGCGAAGACGTAGCCGCTGGCATCAAGAGAATCACGCTCAAGACCTCCGACGACAAGATCTTCCTCGTCGACGAGCCGGTGGCCATGG AGCTCGCCACGGTCAAGAACTTCTTCTGCGGAGACGAATGCGACATGGCCTCATCAAGCGAAACCAGCGGCGCCGTGATCCCTCTGCCCAACGTCTCGGC TGAAGCCCTAGCCAAGATCATCCTCTACTGCACCAAGGAGGTGGAGTTCAGCAACCTCCCGGCGGAATCCGACGAGAACGAGAAGAAGAAGATGAAGAAG AAGTTCTGCGACGAGTTCGTGAGCGAGCTGAGCAACGACGAGCTGAAGGAGCTGATCGTCGCCGCTAACTACCTCAACGTCCCTCCCATGCTGGACACGC TGAACGAGAACGCCGCGGAACGAATCAAGAACAAGAGCGTGGAGTACGTGAGGGAGTTCTTCGGGATCGAGAACGATTACACTCCCGAGGAGGAGCAGGC GCTCCGACAGGAGTATGCATGGGCTTTCGAAGGCGTCGACGAGGACTGA
AA sequence Show only first row Show all	>Lus10031747 pacid=23180631 polypeptide=Lus10031747 locus=Lus10031747.g ID=Lus10031747.BGIv1.0 annot-version=v1.0 MSTDGEDVAAGIKRITLKTSDDKIFLVDEPVAMELATVKNFFCGDECDMASSSETSGAVIPLPNVSAEALAKIILYCTKEVEFSNLPAESDENEKKKMKK KFCDEFVSELSNDELKELIVAANYLNVPPMLDTLNENAAERIKNKSVEYVREFFGIENDYTPEEEQALRQEYAWAFEGVDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	0	1
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	1.0	0.9418
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	2.0	0.9390
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	3.2	0.9110
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	3.5	0.9169
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	4.0	0.9221
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	4.9	0.9353
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	8.8	0.8948
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	8.9	0.9047
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	11.2	0.9061
AT2G41945			unknown protein		Lus10021080 [exp]	13.4	0.9110

Compare expression of checked genes

Lus10031747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.